CX299755

Overview
NameCX299755
Unique NameCX299755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 5.516e-63
Identity = 125/153 (81.70%), Postives = 130/153 (84.97%), Query Frame = 1
Query:   22 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIH
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 144          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 5.516e-63
Identity = 121/155 (78.06%), Postives = 130/155 (83.87%), Query Frame = 1
Query:   22 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIH
Sbjct:    1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIH 149          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.670e-62
Identity = 115/149 (77.18%), Postives = 124/149 (83.22%), Query Frame = 1
Query:   61 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDY WDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+H
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 162          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.318e-61
Identity = 119/162 (73.46%), Postives = 131/162 (80.86%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIH
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIH 166          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.318e-61
Identity = 119/162 (73.46%), Postives = 131/162 (80.86%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIH
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIH 166          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 4.371e-60
Identity = 117/157 (74.52%), Postives = 129/157 (82.17%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+H
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVH 152          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 2.398e-58
Identity = 113/158 (71.52%), Postives = 126/158 (79.75%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MATS +   S+F G+        NEL        GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIH
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIH 153          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.132e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDY WDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+H
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVH 151          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.132e-58
Identity = 111/157 (70.70%), Postives = 127/157 (80.89%), Query Frame = 1
Query:   22 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDY WDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+H
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVH 151          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.091e-58
Identity = 111/155 (71.61%), Postives = 123/155 (79.35%), Query Frame = 1
Query:   22 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDY WDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+H
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVH 152          
The following BLAST results are available for this feature:
BLAST of CX299755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_SOYBN5.516e-6381.70Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ORYSJ5.516e-6378.06Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY4.670e-6277.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY2.318e-6173.46Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY2.318e-6173.46Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_SILPR4.371e-6074.52Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI2.398e-5871.52Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_ORYSJ3.132e-5870.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.132e-5870.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE4.091e-5871.61Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07002B01SK NTLeaf1 Citrus clementina cDNA clone C07002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299755 ID=CX299755; Name=CX299755; organism=Citrus clementina; type=EST; length=479bp
AACAACTCTGATCATTGCAAAATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCTGA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGCAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACN
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTGTGGTTCAAGGCGGGAGCTCAAATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGAAACCCAAGCTTGATCCACGC
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