CX299755

Overview
NameCX299755
Unique NameCX299755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 7.733e-49
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1
Query:  196 PFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            PFSGEPPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 94          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.250e-48
Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1
Query:   22 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            MA++ MA +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDY WDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+H
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 155          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.117e-47
Identity = 90/122 (73.77%), Postives = 103/122 (84.43%), Query Frame = 1
Query:  124 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDY WDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+H
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 141          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.458e-47
Identity = 91/152 (59.87%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   25 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDY WDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+H
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVH 152          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.750e-46
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1
Query:  148 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDY WDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIH
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIH 144          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 8.003e-46
Identity = 96/140 (68.57%), Postives = 103/140 (73.57%), Query Frame = 1
Query:   58 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDY WDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+H
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 157          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.544e-41
Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 1
Query:  163 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477
            +YGPDR K+LGPFS  + P YLTGEFPGDY WDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIH
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIH 139          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.380e-34
Identity = 75/119 (63.03%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  127 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIH 477
            K  SKS SS + +YGPD          + P   TGEFPGDY WDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIH
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIH 162          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  136 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 459
            SK+VS  S     WYGPDR  +L        E P YL GE  GDY +D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164          
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  172 PDRVKYLGPFSGE-PPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 426
            PDR  +   F G  PP +L G  PGD+ +D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144          
The following BLAST results are available for this feature:
BLAST of CX299755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB22_CUCSA7.733e-4993.62Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_HORVU2.250e-4862.58Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLRE1.117e-4773.77Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC1.458e-4759.87Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLMO2.750e-4678.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO8.003e-4668.57Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE4.544e-4172.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.380e-3463.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH1.520e-2048.28Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_SOLLC1.246e-1445.35Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07002B01SK NTLeaf1 Citrus clementina cDNA clone C07002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299755 ID=CX299755; Name=CX299755; organism=Citrus clementina; type=EST; length=479bp
AACAACTCTGATCATTGCAAAATGGCAACCTCAACAATGGCTCTCTCCTC
ATCATTCGTCGGCAAGGCTGTGAACCTCGCCCCTTCAGGCAATGAGCTGA
GCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCT
TCAGGCAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATT
CTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACN
GTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAAC
CGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGG
ATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGG
CCGTGTGGTTCAAGGCGGGAGCTCAAATCTTCAGCGAGGGCGGGCTTGAC
TACTTGGGAAACCCAAGCTTGATCCACGC
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