CX299755
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 7.733e-49 Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1 Query: 196 PFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 PFSGEPPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 94
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 2.250e-48 Identity = 97/155 (62.58%), Postives = 115/155 (74.19%), Query Frame = 1 Query: 22 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 MA++ MA +S + V K L+ G S + + ++ G+ WYGPDRVKYLGPFS + PSYL GEFPGDY WDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L + GV+F E VWFKAG+QIFSEGGLDYLGNP+L+H Sbjct: 1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVH 155
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.117e-47 Identity = 90/122 (73.77%), Postives = 103/122 (84.43%), Query Frame = 1 Query: 124 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 +KT +K+ SSG +YGP+R K+LGP+S P+YLTGEFPGDY WDTAGLSADPETF + RELE+IH RWAMLGALGC PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+H Sbjct: 20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 141
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.458e-47 Identity = 91/152 (59.87%), Postives = 112/152 (73.68%), Query Frame = 1 Query: 25 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 +++T+ ++ F+G+ N P + ++ G ++ S WYGPDRVKYLGPFS + PSYL GEFPGDY WDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L + V F E VWFKAG+QIFS+GGLDYLGNP+L+H Sbjct: 9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVH 152
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 2.750e-46 Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1 Query: 148 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 S+G WYGPDR K+LGPFS P+YLTGEFPGDY WDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+ GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIH Sbjct: 34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIH 144
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 8.003e-46 Identity = 96/140 (68.57%), Postives = 103/140 (73.57%), Query Frame = 1 Query: 58 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 + K L P + L +M K +KS S S RVKYLGPFSGE PSYLTGEFPGDY WDTAGLSA PETFAKNRELEVIH R AM ALGC+FPELL+ G FGEAVWFKAGAQIFSEGGLDYLGNPSL+H Sbjct: 20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVH 157
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.544e-41 Identity = 78/107 (72.90%), Postives = 93/107 (86.92%), Query Frame = 1 Query: 163 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 477 +YGPDR K+LGPFS + P YLTGEFPGDY WDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++ GV+FGE VWFKAGAQIF++GGL+YLGN SLIH Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIH 139
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 5.380e-34 Identity = 75/119 (63.03%), Postives = 87/119 (73.11%), Query Frame = 1 Query: 127 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIH 477 K SKS SS + +YGPD + P TGEFPGDY WDTAGLSADPETF + RELE+IH R +LGALG V PELLA +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIH Sbjct: 45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIH 162
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20 Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 136 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 459 SK+VS S WYGPDR +L E P YL GE GDY +D GL PE FAK + E+IH RWAMLGA G + PE L + G G EAVWFK GA + L+Y G Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFG 164
BLAST of CX299755 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14 Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 172 PDRVKYLGPFSGE-PPSYLTGEFPGDYXWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 426 PDR + F G PP +L G PGD+ +D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144 The following BLAST results are available for this feature:
BLAST of CX299755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299755 ID=CX299755; Name=CX299755; organism=Citrus clementina; type=EST; length=479bpback to top |