CX299763

Overview
NameCX299763
Unique NameCX299763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.243e-17
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   88 VLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            V+F    ++    S     ++TNKVYFD++   K  GRIV+GL+G+ VPKT ENFRAL TGEKG G       YK S FHR+I  FM+
Sbjct:    8 VIFLAIVALATLVSASTNPKVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMI 88          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  160 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IPSFM
Sbjct:   48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFM 103          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:  154 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFML 351
            +K + D+ I G+  GRIV+ L+   VPKTAENFR LCTGEKG+G  +G PLHYKG+ FHR+I  FM+
Sbjct:    4 SKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMI 70          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  160 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            VYFD+ I GKPAGRI   LF   VPKTA+NFRALCTGE+G G       YKGS FHR+IP FML
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFML 59          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  154 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            ++VYFDVE  G+P GR+V  L+   VPKTAENFRALCTGEKG G       Y GS FHR+IP FML
Sbjct:    2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFML 60          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.689e-16
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   67 LTMLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            L ++  + L A   S  A    +    +T KV+FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FHR+I  FM+
Sbjct:    9 LPLVLCVGLSALVPSAGASGFRKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMI 96          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.689e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  145 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            EIT+KVYFD++   +  G+IVMGL+G  VPKT ENFRALCTGE G G       YKGS FHR+I +FM+
Sbjct:   29 EITHKVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMI 90          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFML 351
            + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR++  FM+
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 74          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFML 351
            + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR++  FM+
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 74          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFML 351
            + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR++  FM+
Sbjct:    9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMV 74          
The following BLAST results are available for this feature:
BLAST of CX299763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PPIB_ORPSP9.243e-1748.86Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_HUMAN1.207e-1666.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYP40_ARATH1.207e-1658.21Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIA2_RHIOR1.577e-1665.63Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CYPH_YEAST2.059e-1662.12Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIC_BOVIN2.689e-1649.47Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIB_YARLI2.689e-1659.42Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIG_RAT3.512e-1657.58Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE3.512e-1657.58Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN3.512e-1657.58Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC07002B10SK NTLeaf1 Citrus clementina cDNA clone C07002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299763 ID=CX299763; Name=CX299763; organism=Citrus clementina; type=EST; length=353bp
CCAAAGTGAGTGACTGCGAAACGAGAAACAACGAAGTGATACATGGCTTC
GACAAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCTGTTTGCCA
CTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGAAAGAAATC
ACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCTGCCGGACG
TATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATT
TCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCGGGAAGCCA
CTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGCTTTATGCT
TCA
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