CX299763

Overview
NameCX299763
Unique NameCX299763
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.651e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  163 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFML 351
            +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+GK +GK L YKGSTFHR++ +FM+
Sbjct:   10 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMI 73          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.651e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  163 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFML 351
            +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+GK +GK L YKGSTFHR++ +FM+
Sbjct:   10 HFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMI 73          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.130e-14
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   61 LPLTMLWAIVLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            L   ++   V F       A    +   ++T KVYFD+ I  +  GR++ GLFGK VPKT +NF AL TGEKG G       YK S FHR+I  FM+
Sbjct:   13 LAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMI 102          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.130e-14
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  157 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 348
            +V+FD+    +P GRIVM L    VPKTAENFRALCTGEKG G       YKGS FHR+IP+FM
Sbjct:   68 RVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFM 124          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.130e-14
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  160 VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            VYFDV   G+  G+I   L+   VPKTAENFRALCTGEKG G       YKGS FHR+IP FML
Sbjct:    4 VYFDVSADGQKLGKITFKLYDDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPQFML 60          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.130e-14
Identity = 40/63 (63.49%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  163 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            +FDV   G+P GRIV  LF   VPKTA NFRALCTGEKG G       Y GSTFHR+IP FML
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG-------YAGSTFHRVIPQFML 60          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 1.476e-14
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   88 VLFATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            V F       A    +   ++T KVYFD+ I  +  GR+V+GLFGK VPKT +NF AL TGEKG G       YK S FHR+I  FM+
Sbjct:   22 VFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIKDFMI 102          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-14
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  136 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMI 74          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-14
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  136 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMI 74          
BLAST of CX299763 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-14
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  136 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFML 351
            N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I  FM+
Sbjct:    5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMI 74          
The following BLAST results are available for this feature:
BLAST of CX299763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
NKTR_MOUSE8.651e-1556.25NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN8.651e-1556.25NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
PPIB_HUMAN1.130e-1442.27Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIA_DROME1.130e-1460.94Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIA_CANAL1.130e-1460.94Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CYPH_SCHPO1.130e-1463.49Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPIB_BOVIN1.476e-1446.59Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIH_MOUSE1.927e-1452.78Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIH_HUMAN1.927e-1452.78Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN1.927e-1452.78Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07002B10SK NTLeaf1 Citrus clementina cDNA clone C07002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299763 ID=CX299763; Name=CX299763; organism=Citrus clementina; type=EST; length=353bp
CCAAAGTGAGTGACTGCGAAACGAGAAACAACGAAGTGATACATGGCTTC
GACAAAATTTCTTCCACTCACGATGCTATGGGCTATTGTCCTGTTTGCCA
CTTTCTCTTCAATTCAGGCGAAGAAATCGGATCAGAATTTGAAAGAAATC
ACAAACAAAGTTTACTTTGACGTTGAGATTGCTGGAAAACCTGCCGGACG
TATTGTAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATT
TCCGAGCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGCGGGAAGCCA
CTCCACTACAAGGGAAGTACGTTCCATAGGATTATTCCCAGCTTTATGCT
TCA
back to top