CX299766

Overview
NameCX299766
Unique NameCX299766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.010e-36
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   16 PGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.134e-36
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFYCSPHQGAGMVG+VTVN
Sbjct:   16 PSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.757e-36
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ FS++ GEKIVFKNNAG+PHNVVFDEDEIPSGVDV+KISM  +DLLNG GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:   84 PNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDVAKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.951e-35
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+SF VS+G+ IVFKNNAGFPHNVVFDEDEIPSGVD +KISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:   16 PNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.951e-35
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS  S++SGEKI FKNNAGFPHNVVFDEDE+P+GVDV+KISM  EDLLN PGE Y+VTLTEKGTY FYC+PH GAGMVG+VTVN
Sbjct:   82 PSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 165          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.951e-35
Identity = 70/84 (83.33%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PSS  VS+GE IVFKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:   85 PSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.548e-35
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P++F+V+SGEKI FKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YSFYCSPHQGAGMVG+VTVN
Sbjct:   16 PNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN  GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:   16 PNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.414e-35
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS FS+S GEKIVFKNNAGFPHN+VFDED IPSGVD SKISMS EDLLN  GET+ V L+ KG YSFYCSPHQGAGMVG+VTVN
Sbjct:   85 PSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.197e-34
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS FSV +GEKIVFKNNAGFPHNV+FDED +PSGVDVSKISMS EDLLN  GET+ V L++KG Y+FYCSPHQGAGMVG+V VN
Sbjct:   85 PSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168          
The following BLAST results are available for this feature:
BLAST of CX299766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_SOLTU3.010e-3682.14Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_PHAVU5.134e-3684.52Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]
PLAS2_ARATH8.757e-3680.95Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_VICFA1.951e-3582.14Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_SILPR1.951e-3579.76Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS_PEA1.951e-3583.33Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS_CUCSA2.548e-3578.57Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_CAPBU4.346e-3580.95Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS1_POPNI7.414e-3580.95Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_POPNI8.197e-3478.57Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07002C01SK NTLeaf1 Citrus clementina cDNA clone C07002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299766 ID=CX299766; Name=CX299766; organism=Citrus clementina; type=EST; length=365bp
TCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACA
ATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATGAGATTCCGAGT
GGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGG
TCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTT
TCTACTGTTCCCCTCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTT
AATTAAGTTCACATTCAGACTTTGTTTGCCTCATCTCATTGGTTATCGTT
CTCTTCTTTTTGCATTTTATGAGTATCATACATATTTTCATTTGGTGAAA
AAAAAAAAAAAAAAA
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