CX299766

Overview
NameCX299766
Unique NameCX299766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.826e-33
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PS F+V+ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM    LLNG GETY VTLTE G+Y FYC+PHQGAGMVG++TV
Sbjct:   88 PSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.184e-32
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PS+  V++GE +VFKNNAGFPHNV+FDEDE+P GVD   ISM  EDLLN PGET++VTL EKGTYS YCSPHQGAGM G++TVN
Sbjct:   83 PSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPKGVDAGAISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.973e-31
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+   V++GE+IVFKNNAGFPHNV+FDED +P+GVDVS ISMS EDLLN PGETY V L +KGTY F+C+PHQG GM G VTVN
Sbjct:   16 PNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.108e-30
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+  KIS    + LNG GETY VTLTEKGTY FYC PH GAGM G+VTVN
Sbjct:   16 PSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQ--PEYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.890e-30
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   73 PNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.890e-30
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   73 PNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.890e-30
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY FYC PH GAGM G+VTV
Sbjct:   16 PSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.089e-29
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P+ FSV +GE I FKNNAG+PHNVVFDED +PSGVDVSKIS   E+ L  PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   74 PNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.452e-24
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P + ++ SGE + F NNAGFPHN+VFDED IPSGV+   IS   +D LN PGETY+V LT  G Y +YC PHQGAGMVG++ V
Sbjct:   64 PKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISR--DDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.510e-23
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 253
            P   SV++GE + F NN GFPHNVVFDED +P+GV    I+   ED LNGP E++++T    GTY FYC PHQGAGM G VTV+
Sbjct:   87 PKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAGVKTEDINH--EDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168          
The following BLAST results are available for this feature:
BLAST of CX299766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS1_ARATH1.826e-3379.52Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_FRIAG1.184e-3272.62Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_GINBI4.973e-3171.43Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_PETCR1.108e-3072.62Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_ORYSJ1.890e-3073.81Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI1.890e-3073.81Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_DAUCA1.890e-3074.70Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_HORVU2.089e-2971.43Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_CHLRE3.452e-2460.24Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]
PLAS_PHYPA6.510e-2357.14Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]

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Properties
Property NameValue
Genbank descriptionC07002C01SK NTLeaf1 Citrus clementina cDNA clone C07002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299766 ID=CX299766; Name=CX299766; organism=Citrus clementina; type=EST; length=365bp
TCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACA
ATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATGAGATTCCGAGT
GGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGG
TCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTT
TCTACTGTTCCCCTCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTT
AATTAAGTTCACATTCAGACTTTGTTTGCCTCATCTCATTGGTTATCGTT
CTCTTCTTTTTGCATTTTATGAGTATCATACATATTTTCATTTGGTGAAA
AAAAAAAAAAAAAAA
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