CX299766

Overview
NameCX299766
Unique NameCX299766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.450e-22
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PSS ++ +GE + + NNAGFPHN+VFDEDE+PSG +    ++S ED LN PGE+Y+      GTY ++C PHQGAGM G +TV
Sbjct:   17 PSSVTIKAGETVTWVNNAGFPHNIVFDEDEVPSGANAE--ALSHEDYLNAPGESYSAKFDTAGTYGYFCEPHQGAGMKGTITV 97          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.315e-20
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P++ ++ +G+ + + NNAGFPHN+VFDED +P+GV+    ++S +D LN PGE+Y       G Y ++C PHQGAGMVG+V V
Sbjct:   64 PATVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNAD--ALSHDDYLNAPGESYTAKFDTAGEYGYFCEPHQGAGMVGKVIV 144          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P++ +V +GE I F NNAGFPHN+VFDED +P+GVD   I  S ED LN  G+T    LT  GTY  YC PH GAGM   +TV
Sbjct:   17 PNNITVGAGESIEFINNAGFPHNIVFDEDAVPAGVDADAI--SAEDYLNSKGQTVVRKLTTPGTYGVYCDPHSGAGMKMTITV 97          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:   17 PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:   17 PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_CYAP7 (Plastocyanin OS=Cyanothece sp. (strain PCC 7424) GN=petE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.708e-16
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P   ++ +G+ + + NN   PHN VFD  ++P  V  +KIS     L+  PGE++  T  E GTY++YC PH+GAGMVG +TV
Sbjct:   46 PPQLTIKAGDTVKWVNNKLAPHNAVFDNSKVPDSVSATKISHKA--LVFSPGESFTTTFDEPGTYTYYCEPHRGAGMVGTITV 126          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PROHO (Plastocyanin OS=Prochlorothrix hollandica GN=petE PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            P + S+S+G+ + F  N   PHNV+FD+  +P+G   S  ++S   L   PG  Y+VTL   GTYSFYC+PH+GAGMVG +TV
Sbjct:   52 PKALSISAGDTVEFVMNKVGPHNVIFDK--VPAGE--SAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCTPHRGAGMVGTITV 130          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_PHOLA (Plastocyanin OS=Phormidium laminosum GN=petE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.214e-14
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE---KGTYSFYCSPHQGAGMVGQVTV 250
            P++ +V  G+ + + NN   PHN++FD+ ++P         +S   L+  PGE+Y +T +     GTY++YC+PH+GAGMVG++TV
Sbjct:   52 PANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 137          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SYNY3 (Plastocyanin OS=Synechocystis sp. (strain PCC 6803) GN=petE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKIS-MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PS+ ++ +GE++ + NN   PHN+VF  D    GVD    + +S + L    GE++  T TE GTY++YC PH+GAGMVG+V V
Sbjct:   46 PSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVV 125          
BLAST of CX299766 vs. ExPASy Swiss-Prot
Match: PLAS_SYNP6 (Plastocyanin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 2
Query:    2 PSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 250
            PS+  + +G+ + + NN   PHNVV +           +  +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   52 PSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124          
The following BLAST results are available for this feature:
BLAST of CX299766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_CHLFU1.450e-2254.22Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_SCEOB2.315e-2048.19Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]
PLAS_ENTPR3.949e-2055.42Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]
PLAS_ULVPE1.501e-1955.42Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]
PLAS_ULVAR1.501e-1955.42Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_CYAP77.708e-1643.37Plastocyanin OS=Cyanothece sp. (strain PCC 7424) G... [more]
PLAS_PROHO4.996e-1548.19Plastocyanin OS=Prochlorothrix hollandica GN=petE ... [more]
PLAS_PHOLA7.214e-1438.37Plastocyanin OS=Phormidium laminosum GN=petE PE=1 ... [more]
PLAS_SYNY31.607e-1344.05Plastocyanin OS=Synechocystis sp. (strain PCC 6803... [more]
PLAS_SYNP61.361e-1239.76Plastocyanin OS=Synechococcus sp. (strain ATCC 271... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07002C01SK NTLeaf1 Citrus clementina cDNA clone C07002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299766 ID=CX299766; Name=CX299766; organism=Citrus clementina; type=EST; length=365bp
TCCAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACA
ATGCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATGAGATTCCGAGT
GGTGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGG
TCCTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTT
TCTACTGTTCCCCTCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTT
AATTAAGTTCACATTCAGACTTTGTTTGCCTCATCTCATTGGTTATCGTT
CTCTTCTTTTTGCATTTTATGAGTATCATACATATTTTCATTTGGTGAAA
AAAAAAAAAAAAAAA
back to top