CX299781

Overview
NameCX299781
Unique NameCX299781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345
            GVLHGA+S LLQD +GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EAL A +  S  EGIIPALETAHALA+LEKLCPTL+ G ++V+N SGRGDKDV T  + L+
Sbjct:  299 GVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTVAEKLK 413          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.624e-40
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336
            GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+L + GRAEY  VTD EAL A +  S+LEGIIPALETAHA A+L+ LCP+LA GT++V+N SGRGDKDV T  K
Sbjct:  299 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFAWLDTLCPSLAPGTEIVINCSGRGDKDVNTVAK 410          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.427e-40
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD++AL+  +  S LEGIIPALETAHA A+LE+LCPTL  G +VV+N SGRGDKDV T  + L
Sbjct:  301 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDEQALDGLRLVSELEGIIPALETAHAFAWLEQLCPTLPQGCEVVINCSGRGDKDVNTVAEKL 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.302e-39
Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342
            GVLHGA+S LLQD++GQ+ E HSISAGLDYPGVGPEHS+L + GRAEY  V+D +AL+A +  S LEGIIPALETAHA A+LE LCPTLA GT+VV+N SGRGDKDV T  + L
Sbjct:  319 GVLHGAMSLLLQDDEGQVQEAHSISAGLDYPGVGPEHSYLCEIGRAEYAAVSDQQALDALRLVSELEGIIPALETAHAFAWLETLCPTLAAGTEVVINCSGRGDKDVNTVAEKL 432          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.302e-39
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A +  S LEGIIPALET+HA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.701e-39
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LK+ GRAEY +VTD EAL+A K  S LEGIIPALET+HA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKEIGRAEYGSVTDQEALDALKLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.901e-39
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348
            G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL++ +  S LEGIIPALET+HA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDSLRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YLLQDEDGQIIE HS+SAGLDYPGVGPEH++LKD GRAEY  VTD EAL AF    R+EGIIPALE++HALAY  KL PTLA    ++VN SGRGDKD+ T
Sbjct:  282 GVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAAFHTLCRIEGIIPALESSHALAYAAKLAPTLAKDKILLVNLSGRGDKDMHT 390          
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.146e-38
Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1
Query:    1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327
            GVLHG  +YLLQD +GQIIE HSISAGLDYPGVGPEH++LKD GRAEY  +TDDEAL+AF R  R EGIIPALE++HA+AY  KL PT+     ++VN SGRGDKD+ T
Sbjct:  282 GVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGT 390          
The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 427
Match NameE-valueIdentityDescription
TRPB_PROMS2.009e-4068.97Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMA2.009e-4070.43Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM42.624e-4071.43Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS93.427e-4070.18Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMM1.302e-3970.18Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM91.302e-3967.24Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM01.701e-3967.24Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM22.901e-3966.38Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_DECAR4.189e-3871.56Tryptophan synthase beta chain OS=Dechloromonas ar... [more]
TRPB_METPP7.146e-3868.81Tryptophan synthase beta chain OS=Methylibium petr... [more]

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Properties
Property NameValue
Genbank descriptionC07002D05SK NTLeaf1 Citrus clementina cDNA clone C07002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bp
GGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATGGGCA
AATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGAGTTG
GACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTATAAT
GTCACAGATGATGAAGCATTGGAAGCTTTCAAGAGGTCATCACGGCTAGA
GGGTATAATCCCAGCTTTGGAGACTGCTCATGCATTGGCTTATTTGGAGA
AGCTATGCCCAACTCTTGCTGATGGTACTAAGGTTGTGGTTAACTTCAGT
GGCAGAGGTGACAAGGATGTCCAGACAGCGATCAAATATTTGCAAGTTTG
ATGGTAATGCTTGTAACCCACAATATATGATTCATTTACTGAAAACAAAT
AAATGGGTTGCTTGAGCTTCTGTTTTTGAATTTTGTATCATTAGTTATTT
CAGAGATGTGAGAACCATCTTATGTAATTTGAGTTAAAACTTTATAAAAA
AAAAAAAAAAAA
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