CX299781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40 Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A K S LEGIIPALETAHA A+L+KLCPTL T +V+N SGRGDKDV T L + Sbjct: 299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVASSLDI 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40 Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 345 GVLHGA+S LLQD +GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EAL A + S EGIIPALETAHALA+LEKLCPTL+ G ++V+N SGRGDKDV T + L+ Sbjct: 299 GVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTVAEKLK 413
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.624e-40 Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 336 GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+L + GRAEY VTD EAL A + S+LEGIIPALETAHA A+L+ LCP+LA GT++V+N SGRGDKDV T K Sbjct: 299 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLNEIGRAEYVAVTDKEALNALELVSKLEGIIPALETAHAFAWLDTLCPSLAPGTEIVINCSGRGDKDVNTVAK 410
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 3.427e-40 Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD++AL+ + S LEGIIPALETAHA A+LE+LCPTL G +VV+N SGRGDKDV T + L Sbjct: 301 GVLHGAMSLLLQDSDGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDEQALDGLRLVSELEGIIPALETAHAFAWLEQLCPTLPQGCEVVINCSGRGDKDVNTVAEKL 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.302e-39 Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 342 GVLHGA+S LLQD++GQ+ E HSISAGLDYPGVGPEHS+L + GRAEY V+D +AL+A + S LEGIIPALETAHA A+LE LCPTLA GT+VV+N SGRGDKDV T + L Sbjct: 319 GVLHGAMSLLLQDDEGQVQEAHSISAGLDYPGVGPEHSYLCEIGRAEYAAVSDQQALDALRLVSELEGIIPALETAHAFAWLETLCPTLAAGTEVVINCSGRGDKDVNTVAEKL 432
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.302e-39 Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A + S LEGIIPALET+HA A+L+KLCPTL T +V+N SGRGDKDV T L + Sbjct: 299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.701e-39 Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LK+ GRAEY +VTD EAL+A K S LEGIIPALET+HA A+L+KLCPTL T +V+N SGRGDKDV T L + Sbjct: 299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKEIGRAEYGSVTDQEALDALKLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 2.901e-39 Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 348 G+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL++ + S LEGIIPALET+HA A+L+KLCPTL T +V+N SGRGDKDV T L + Sbjct: 299 GILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDSLRLVSELEGIIPALETSHAFAWLDKLCPTLEKDTHIVINCSGRGDKDVNTVASSLDI 414
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38 Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YLLQDEDGQIIE HS+SAGLDYPGVGPEH++LKD GRAEY VTD EAL AF R+EGIIPALE++HALAY KL PTLA ++VN SGRGDKD+ T Sbjct: 282 GVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAAFHTLCRIEGIIPALESSHALAYAAKLAPTLAKDKILLVNLSGRGDKDMHT 390
BLAST of CX299781 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 7.146e-38 Identity = 75/109 (68.81%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 1 GVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 327 GVLHG +YLLQD +GQIIE HSISAGLDYPGVGPEH++LKD GRAEY +TDDEAL+AF R R EGIIPALE++HA+AY KL PT+ ++VN SGRGDKD+ T Sbjct: 282 GVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGT 390 The following BLAST results are available for this feature:
BLAST of CX299781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 427
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299781 ID=CX299781; Name=CX299781; organism=Citrus clementina; type=EST; length=512bpback to top |