CX299792

Overview
NameCX299792
Unique NameCX299792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.088e-25
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            DV +  RSEA+ W+ +V  +Y FS++TA LA+NYLDRFL  +     + WM QLL+V CLS+AAK+EET VP  LDLQ+   +++FE + I RMELLVL+ L W+
Sbjct:  104 DVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWR 208          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.421e-25
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  210 VVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            + AR+++V W+LKV   YG   +TA LA++Y+DRFL S H      W +QLLAVTCLSLAAK+EET VP +LDLQ+E A+Y+FE + I RMELLVL  L+W+
Sbjct:  113 LAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFL-SLHRLPGNGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWR 213          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            L V R +A+ W+ K    + F  L   LA+NYLDRFL        K W++QLLAV CLSLAAK+EET+VP+L+DLQV   ++VFE K++QRMELLVL+ L+W+
Sbjct:   74 LNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWR 176          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  222 SEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            SE+V W+LKV + +GF   TA LA++Y+DRF+ S     D  W  QLL V CLSLAAK+EE+  P LLDLQ+EG +++FE + IQRMEL+VL  L+W+
Sbjct:  126 SESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWR 222          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  210 VVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI-DKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAK-------YVFETKAIQRMELLVLSTLEWK 515
            V AR  AV W L+  A  GFS LTA LA+ YLDR       ++ D+PWM +L AV C++LAAKVEET+VP+LLDLQ+  A+       YVFE K ++RMELLVLS L W+
Sbjct:   75 VSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWR 184          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.278e-22
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  192 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            ++ D+    R +A+ W+ K      F  L   LA+NYLDRFL        K W +QLLAV CLSLAAK+EET VP L+ LQV    +VFE K++QRMELLVL+ L W+
Sbjct:   60 RNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWR 167          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD53_ORYSJ (Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.869e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            AR+  V W++K NA + FS  TA +A+ YLDRFL       DK W +QLL+V CLSLAAKVEE + P L + +++    +++  ++ RMELLVL+TL+W+
Sbjct:   99 ARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLD----MYDCASLMRMELLVLTTLKWQ 194          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.143e-17
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRF-LRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            D D    AR  AV+W+L+   ++GF   TA LAI Y DRF LR    +   PW  +LL++ C+S+AAK+EE Q P L +    G + VF + +I+RMELLVLSTL W+
Sbjct:   92 DGDWFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWR 198          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRF-LRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ--VEGAKYVFETKAIQRMELLVLSTLEWK 515
            D   +AR   V+W+L+    +GF   TA LAI Y DRF LR    +   PW  +LLAV C+SLAAK+EE + P L + +  V    Y F    I+RMELLVLSTL+W+
Sbjct:  103 DWFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWR 210          
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.741e-15
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  228 AVEWVLKVNAHYGFSTLTAILAINYLDRFL--RSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515
            A++W+L     +GF   TA +AI+Y D FL  R    Q D+ W ++LL+V CLSLAAK+EE  VP L     +   +VF+   I++ ELL+LSTL+WK
Sbjct:   75 AIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWK 171          
The following BLAST results are available for this feature:
BLAST of CX299792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CCD42_ORYSJ1.088e-2552.38Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD12_ORYSJ1.421e-2556.86Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ARATH2.679e-2453.40Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=... [more]
CCD11_ORYSJ5.969e-2454.08Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD32_ORYSJ1.126e-2253.64Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ARATH4.278e-2249.07Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=... [more]
CCD53_ORYSJ2.869e-1847.00Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD52_ORYSJ4.143e-1746.30Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ORYSJ2.686e-1646.30Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ARATH1.741e-1544.90Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07002E04SK NTLeaf1 Citrus clementina cDNA clone C07002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299792 ID=CX299792; Name=CX299792; organism=Citrus clementina; type=EST; length=516bp
GTGAAGAAGAAGAGTTAGAAGATGAGGTTATTGACCAAGAAGACGATGAA
TGTAGCCAAAACAAAAACCCAGCTTGTTTGTTTTCACTTCTTTTGTTAGA
ACAAGACTTGTTCTGGGAAGATGAAGAGCTCTTGTCTCTCTTCTCCAAAG
AAGAGCAACAGCTTTTAAAGCAAGAAACACAAACCCATTATAAAGATTCC
GATGTTCTTGTTGTTGCTAGGAGTGAGGCTGTTGAGTGGGTGCTCAAAGT
TAATGCTCATTATGGGTTCTCTACTCTCACTGCAATACTGGCTATTAACT
ATCTGGATAGGTTCCTCCGTAGCTTCCATTTTCAAATAGATAAGCCTTGG
ATGATTCAGCTTTTGGCTGTCACTTGTCTCTCCCTGGCTGCTAAAGTTGA
AGAAACCCAAGTGCCCCTTCTCTTAGACCTCCAAGTTGAGGGGGCAAAAT
ATGTTTTTGAGACCAAAGCCATACAAAGAATGGAGCTTTTGGTGCTCTCA
ACACTTGAATGGAAGA
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