CX299792
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.088e-25 Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 3 Query: 201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 DV + RSEA+ W+ +V +Y FS++TA LA+NYLDRFL + + WM QLL+V CLS+AAK+EET VP LDLQ+ +++FE + I RMELLVL+ L W+ Sbjct: 104 DVDLRVRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWR 208
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 1.421e-25 Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3 Query: 210 VVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 + AR+++V W+LKV YG +TA LA++Y+DRFL S H W +QLLAVTCLSLAAK+EET VP +LDLQ+E A+Y+FE + I RMELLVL L+W+ Sbjct: 113 LAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFL-SLHRLPGNGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWR 213
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24 Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 3 Query: 207 LVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 L V R +A+ W+ K + F L LA+NYLDRFL K W++QLLAV CLSLAAK+EET+VP+L+DLQV ++VFE K++QRMELLVL+ L+W+ Sbjct: 74 LNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWR 176
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24 Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 3 Query: 222 SEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 SE+V W+LKV + +GF TA LA++Y+DRF+ S D W QLL V CLSLAAK+EE+ P LLDLQ+EG +++FE + IQRMEL+VL L+W+ Sbjct: 126 SESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWR 222
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22 Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 3 Query: 210 VVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQI-DKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAK-------YVFETKAIQRMELLVLSTLEWK 515 V AR AV W L+ A GFS LTA LA+ YLDR ++ D+PWM +L AV C++LAAKVEET+VP+LLDLQ+ A+ YVFE K ++RMELLVLS L W+ Sbjct: 75 VSAREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWR 184
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 4.278e-22 Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 192 KDSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 ++ D+ R +A+ W+ K F L LA+NYLDRFL K W +QLLAV CLSLAAK+EET VP L+ LQV +VFE K++QRMELLVL+ L W+ Sbjct: 60 RNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWR 167
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD53_ORYSJ (Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.869e-18 Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 3 Query: 216 ARSEAVEWVLKVNAHYGFSTLTAILAINYLDRFLRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 AR+ V W++K NA + FS TA +A+ YLDRFL DK W +QLL+V CLSLAAKVEE + P L + +++ +++ ++ RMELLVL+TL+W+ Sbjct: 99 ARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLD----MYDCASLMRMELLVLTTLKWQ 194
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.143e-17 Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 195 DSDVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRF-LRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 D D AR AV+W+L+ ++GF TA LAI Y DRF LR + PW +LL++ C+S+AAK+EE Q P L + G + VF + +I+RMELLVLSTL W+ Sbjct: 92 DGDWFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWR 198
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 2.686e-16 Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 3 Query: 201 DVLVVARSEAVEWVLKVNAHYGFSTLTAILAINYLDRF-LRSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQ--VEGAKYVFETKAIQRMELLVLSTLEWK 515 D +AR V+W+L+ +GF TA LAI Y DRF LR + PW +LLAV C+SLAAK+EE + P L + + V Y F I+RMELLVLSTL+W+ Sbjct: 103 DWFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWR 210
BLAST of CX299792 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 1.741e-15 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 228 AVEWVLKVNAHYGFSTLTAILAINYLDRFL--RSFHFQIDKPWMIQLLAVTCLSLAAKVEETQVPLLLDLQVEGAKYVFETKAIQRMELLVLSTLEWK 515 A++W+L +GF TA +AI+Y D FL R Q D+ W ++LL+V CLSLAAK+EE VP L + +VF+ I++ ELL+LSTL+WK Sbjct: 75 AIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILSTLDWK 171 The following BLAST results are available for this feature:
BLAST of CX299792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299792 ID=CX299792; Name=CX299792; organism=Citrus clementina; type=EST; length=516bpback to top |