CX299816

Overview
NameCX299816
Unique NameCX299816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.553e-59
Identity = 109/141 (77.30%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:  127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.252e-59
Identity = 110/141 (78.01%), Postives = 116/141 (82.27%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  138 FGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.252e-59
Identity = 109/141 (77.30%), Postives = 117/141 (82.98%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+                 FDPLGLADDP  FA++KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.252e-59
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 7.252e-59
Identity = 112/141 (79.43%), Postives = 117/141 (82.98%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                AFDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 9.471e-59
Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL  H+ADP  NNAWAYATNF PGK
Sbjct:  125 FGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.237e-58
Identity = 109/141 (77.30%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWA+ATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.237e-58
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:  126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.616e-58
Identity = 111/141 (78.72%), Postives = 117/141 (82.98%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYRI                +FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  121 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.110e-58
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 2 
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQA+VTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:  126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_PETSP5.553e-5977.30Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2A_PINSY7.252e-5978.01Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE7.252e-5977.30Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_TOBAC7.252e-5976.60Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_ORYSJ7.252e-5979.43Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU9.471e-5976.60Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2B_SOLLC1.237e-5877.30Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_TOBAC1.237e-5876.60Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_ORYSJ1.616e-5878.72Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_NICPL2.110e-5875.89Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC07002G07SK NTLeaf1 Citrus clementina cDNA clone C07002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bp
CGGGTTCGGCGAAGCATTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTG
AAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGC
ATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGG
ATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACC
CTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCNATCAATTT
GCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTC
CATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTG
AGAACCTCTACNACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCT
TATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGG
TGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGG
AAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAA
TGCTATGCTCCTGATCTTTT
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