CX299816

Overview
NameCX299816
Unique NameCX299816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.756e-58
Identity = 108/141 (76.60%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYRI                +FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW +ATNFVPGK
Sbjct:  127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.756e-58
Identity = 111/141 (78.72%), Postives = 115/141 (81.56%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP  F ELKVKELK GRLAM SMFGFFVQAIVTGKGP+ENL  HIADPV NNAWAYATNFVPGK
Sbjct:  125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMG +EGYR+                 FDPLGLADDP  FA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  138 FGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 107/141 (75.89%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFK G+QIFS+GGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWAYATNFVPGK
Sbjct:  127 FGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.599e-58
Identity = 109/141 (77.30%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:  129 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.701e-58
Identity = 107/141 (75.89%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP  FAELKVK +KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:  127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.701e-58
Identity = 107/141 (75.89%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP  FAEL+VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWA+ATNFVPGK
Sbjct:  126 FGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.018e-58
Identity = 108/141 (76.60%), Postives = 117/141 (82.98%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL  H++DPV NNAW+YATNFVPGK
Sbjct:  128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.018e-58
Identity = 110/141 (78.01%), Postives = 116/141 (82.27%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            FGEA WFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP  FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+A PV NNAWAYATNFVPGK
Sbjct:  123 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.788e-57
Identity = 107/140 (76.43%), Postives = 114/140 (81.43%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPG 424
            FGEA WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPVANNAWAYA    PG
Sbjct:  128 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2A_SPIOL2.756e-5876.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE2.756e-5878.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY3.599e-5876.60Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_NICPL3.599e-5875.89Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PEA3.599e-5877.30Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB25_TOBAC4.701e-5875.89Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PETSP4.701e-5875.89Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB28_PEA8.018e-5876.60Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOYBN8.018e-5878.01Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2_PHYPA6.788e-5776.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07002G07SK NTLeaf1 Citrus clementina cDNA clone C07002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bp
CGGGTTCGGCGAAGCATTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTG
AAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGC
ATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGG
ATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACC
CTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCNATCAATTT
GCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTC
CATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTG
AGAACCTCTACNACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCT
TATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGG
TGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGG
AAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAA
TGCTATGCTCCTGATCTTTT
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