CX299816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.672e-55 Identity = 106/142 (74.65%), Postives = 116/142 (81.69%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 FGEA WFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPLGLA DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADPV NNAWA+ATNFVPGK Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 5.565e-51 Identity = 99/141 (70.21%), Postives = 109/141 (77.30%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPG 424 F E WFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMG VEG+RI FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+ H+ DPVANNAW +AT F PG Sbjct: 127 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 7.269e-51 Identity = 100/141 (70.92%), Postives = 109/141 (77.30%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPG 424 F E WFKAG+QIFS+GGLDYLGNPNL+HAQSILA+ QVVLMG VEG+RI FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ +PVANNAW YAT FVPG Sbjct: 124 FKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 8.036e-50 Identity = 94/139 (67.63%), Postives = 109/139 (78.42%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVP 421 FGEA WFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A A QV+LMG +EGYR+ +FDPLGLADDP FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL H+A+P NNA+A+AT F P Sbjct: 113 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.516e-48 Identity = 96/139 (69.06%), Postives = 106/139 (76.26%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVP 421 FGE WFKAGAQIFSEGGLDYLG+P LIHAQ+I+A A QVVLMG +EGYR+ +FDPLGLADDP FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL H+ADP NNA+A AT F P Sbjct: 116 FGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 8.316e-47 Identity = 94/140 (67.14%), Postives = 106/140 (75.71%), Query Frame = 2 Query: 5 FGEA-FWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVP 421 FG+A WFKAGA IF +GGL+YLGNP+LIHAQ+I+A A QVVLMG VEGYR+ AFDPLGLADDP FAELKVKE+KNGRLAMF+ GFFVQAIVTGKGPIENL H+A+P NNA+AYAT F P Sbjct: 133 FGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.675e-45 Identity = 95/141 (67.38%), Postives = 105/141 (74.47%), Query Frame = 2 Query: 2 GFGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPG 424 GFGEA WFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW +V+LMG VEGYRI +FD LGLA+D FAELKVKELKNGRLAMFSMFGFFVQAIV+ K +ENL H+ V NNA + TNFVPG Sbjct: 128 GFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.863e-44 Identity = 91/142 (64.08%), Postives = 101/142 (71.13%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPG 424 FGE WFKAGAQIF++GGL+YLGN +LIHAQSI+A A QVVLMG E YR FDPLGLADDP FAELKVKE+KNGRLAMFS GFFVQAIVTGKGP++NL H+ADP N A+A AT F PG Sbjct: 111 FGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 6.590e-44 Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL HIADPV NNAWA+ATNFVPGK Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 6.590e-44 Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL HIADPV NNAWA+ATNFVPGK Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267 The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bpback to top |