CX299816

Overview
NameCX299816
Unique NameCX299816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.606e-44
Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.124e-43
Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.124e-43
Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 2
Query:   59 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL  H+ADPV NNAWA+ATNFVPGK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 9.560e-27
Identity = 57/82 (69.51%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQF 250
            FGEA WFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+                AFDPLGLA+DP  F
Sbjct:  124 FGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.057e-25
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   83 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNA-WAYATNFVP 421
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDP  F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 2
Query:   11 EAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANN 391
            EA WFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  144 EAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  212 FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANN 391
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL  H+ADPV NN
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   20 WFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYXHIADPVANN 391
            W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 52/126 (41.27%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   20 WFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYXHIADPVANN 391
            W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2D_SOLLC8.606e-4474.14Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.124e-4374.14Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.124e-4374.14Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA3.270e-4370.16Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR9.560e-2769.51Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_EUGGR1.057e-2555.56Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH1.169e-2451.18Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.096e-1458.33Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB121_HORVU1.432e-1440.48Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.870e-1441.27Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07002G07SK NTLeaf1 Citrus clementina cDNA clone C07002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bp
CGGGTTCGGCGAAGCATTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTG
AAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGC
ATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGG
ATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACC
CTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCNATCAATTT
GCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTC
CATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTG
AGAACCTCTACNACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCT
TATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGG
TGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGG
AAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAA
TGCTATGCTCCTGATCTTTT
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