CX299816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 8.606e-44 Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADPV NNAW+YATNFVPGK Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.124e-43 Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADPV NNAWA+ATNFVPGK Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.124e-43 Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 80 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADPV NNAWA+ATNFVPGK Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 3.270e-43 Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 2 Query: 59 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNAWAYATNFVPGK 427 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL H+ADPV NNAWA+ATNFVPGK Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 9.560e-27 Identity = 57/82 (69.51%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 5 FGEAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQF 250 FGEA WFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+ AFDPLGLA+DP F Sbjct: 124 FGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.057e-25 Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 2 Query: 83 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANNA-WAYATNFVP 421 LIHA+S+LAI A QV+LMG VEGYR FDPLGLADDP F ELKVKE+KNGRLAM M GF+ QAIVTG+GP+EN H+ DP A+N A T F P Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.169e-24 Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 2 Query: 11 EAFWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANN 391 EA WFK GA + L+Y G I +LA+ A +VVL+G E YRI FDPLGLA DP Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN Sbjct: 144 EAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2 Query: 212 FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANN 391 F+PLG D ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL H+ADPV NN Sbjct: 206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14 Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 20 WFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYXHIADPVANN 391 W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP NN Sbjct: 112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14 Identity = 52/126 (41.27%), Postives = 67/126 (53.17%), Query Frame = 2 Query: 20 WFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYXHIADPVANN 391 W KA GG YLG P + ++ I A + + + FVE R AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+ G GP+ENL H+ADP NN Sbjct: 113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bpback to top |