CX299816

Overview
NameCX299816
Unique NameCX299816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.190e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  212 FDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPVANN 391
            F+PLG   D     ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL  H+ADPV NN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 2
Query:   20 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPV 382
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of CX299816 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   20 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPXQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYXHIADPV 382
            W  AG     +G   YLG P      +++ I   +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
The following BLAST results are available for this feature:
BLAST of CX299816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB23_PEA3.190e-1456.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4B_ARATH1.340e-1236.36Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH1.340e-1236.36Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC07002G07SK NTLeaf1 Citrus clementina cDNA clone C07002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299816 ID=CX299816; Name=CX299816; organism=Citrus clementina; type=EST; length=570bp
CGGGTTCGGCGAAGCATTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTG
AAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGC
ATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGG
ATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACC
CTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCNATCAATTT
GCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTC
CATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTG
AGAACCTCTACNACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCT
TATGCCACTAACTTTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGG
TGTCTGTTTCATCTGTAACATTATTCTATCTATCGTATGTGCTTTTGTGG
AAAACTCTGTCATGGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAA
TGCTATGCTCCTGATCTTTT
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