CX299821

Overview
NameCX299821
Unique NameCX299821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.585e-40
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            KFSTRGDIGTANIV RQNT+VDKPE+ATIIEM E VSLTFALRYMNSFT+ATPL+N VTISLSSELPVVVEYKIAEMGYIR+YLAPKIEE+++
Sbjct:  168 KFSTRGDIGTANIVCRQNTSVDKPEDATIIEMQETVSLTFALRYMNSFTKATPLANQVTISLSSELPVVVEYKIAEMGYIRYYLAPKIEEEDE 260          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_MAIZE (Proliferating cell nuclear antigen OS=Zea mays GN=PCNA PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.622e-38
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDETKP 315
            KFST G+IG+ANIV RQN T+DKPEEATIIEM EPVSLTFALRYMNSFT+A+ LS  VTISLSSELPVVVEYKIAEMGYIRFYLAPKIE+DE E KP
Sbjct:  168 KFSTSGEIGSANIVCRQNQTIDKPEEATIIEMQEPVSLTFALRYMNSFTKASSLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEDDE-EMKP 263          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_MACFA (Proliferating cell nuclear antigen OS=Macaca fascicularis GN=PCNA PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.797e-29
Identity = 59/92 (64.13%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS+TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_HUMAN (Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.797e-29
Identity = 59/92 (64.13%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS+TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_BOVIN (Proliferating cell nuclear antigen OS=Bos taurus GN=PCNA PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.004e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVAIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_RAT (Proliferating cell nuclear antigen OS=Rattus norvegicus GN=Pcna PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.230e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVSIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_MOUSE (Proliferating cell nuclear antigen OS=Mus musculus GN=Pcna PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.230e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVHLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_CHICK (Proliferating cell nuclear antigen OS=Gallus gallus GN=PCNA PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.830e-29
Identity = 58/93 (62.37%), Postives = 78/93 (83.87%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKIE+ ++
Sbjct:  168 KFSANGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDQQE 260          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_CRIGR (Proliferating cell nuclear antigen OS=Cricetulus griseus GN=PCNA PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.921e-29
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 300
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKI++MG++++YLAPKIE++E
Sbjct:  168 KFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSTDVPLVVEYKISDMGHLKYYLAPKIEDEE 259          
BLAST of CX299821 vs. ExPASy Swiss-Prot
Match: PCNA_COTJA (Proliferating cell nuclear antigen OS=Coturnix coturnix japonica GN=PCNA PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 58/93 (62.37%), Postives = 77/93 (82.80%), Query Frame = 1
Query:   25 KFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 303
            KFS  G++G  NI L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG+ ++YLAPKIE+ ++
Sbjct:  168 KFSANGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHXKYYLAPKIEDQQE 260          
The following BLAST results are available for this feature:
BLAST of CX299821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PCNA2_DAUCA6.585e-4087.10Proliferating cell nuclear antigen large form OS=D... [more]
PCNA_MAIZE1.622e-3884.54Proliferating cell nuclear antigen OS=Zea mays GN=... [more]
PCNA_MACFA1.797e-2964.13Proliferating cell nuclear antigen OS=Macaca fasci... [more]
PCNA_HUMAN1.797e-2964.13Proliferating cell nuclear antigen OS=Homo sapiens... [more]
PCNA_BOVIN4.004e-2964.13Proliferating cell nuclear antigen OS=Bos taurus G... [more]
PCNA_RAT5.230e-2964.13Proliferating cell nuclear antigen OS=Rattus norve... [more]
PCNA_MOUSE5.230e-2964.13Proliferating cell nuclear antigen OS=Mus musculus... [more]
PCNA_CHICK6.830e-2962.37Proliferating cell nuclear antigen OS=Gallus gallu... [more]
PCNA_CRIGR8.921e-2963.04Proliferating cell nuclear antigen OS=Cricetulus g... [more]
PCNA_COTJA1.522e-2862.37Proliferating cell nuclear antigen OS=Coturnix cot... [more]

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Properties
Property NameValue
Genbank descriptionC07002G12SK NTLeaf1 Citrus clementina cDNA clone C07002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299821 ID=CX299821; Name=CX299821; organism=Citrus clementina; type=EST; length=537bp
GCTGCAGGAATTCGGCCACGAGGGAAGTTCTCTACCAGAGGTGATATTGG
AACTGCTAATATTGTGCTCAGGCAAAATACTACAGTAGACAAGCCAGAAG
AAGCAACAATAATTGAAATGCATGAGCCAGTGTCATTGACTTTTGCTCTG
AGATACATGAATTCATTCACAAGGGCTACTCCACTGTCGAATACTGTTAC
TATCAGCCTATCCTCAGAATTGCCAGTTGTGGTCGAATACAAGATTGCTG
AGATGGGTTATATTAGATTCTACTTGGCACCCAAGATAGAAGAAGATGAG
GATGAGACCAAGCCTCAAGTTTAAGTGTCATTTGGCACGTAGGCTATGGC
ATTTTGTTGAATCAAGTTACTCCTATATTTTAAGTTTGCTTTTAGAATGT
TTCTCGTAAATCTTCATGTTGGAAAACCAAGCATTTGTAGTTCGGTAGAT
TGTTAAAAACTCCTTTCATGTGCTTGGCTTTTTTATCCTACTGTTGTACA
TGTAATCAATTCCTTTGTCAAAAAAAAAAAAAAAAAA
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