CX299823

Overview
NameCX299823
Unique NameCX299823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.406e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3
Query:  135 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 78.1814 bits (191), Expect = 1.484e-14
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 3
Query:   18 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 134
            PDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.061e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3
Query:  135 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 75.485 bits (184), Expect = 9.616e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3
Query:   18 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 134
            PDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.103e-29
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 3
Query:  135 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 365
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG+
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGGN 77          

HSP 2 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3
Query:   21 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 134
            DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.860e-28
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3
Query:  135 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3
Query:   21 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 134
            DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.607e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3
Query:  168 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 356
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          

HSP 2 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 3
Query:   18 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 128
            PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   27 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.137e-21
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  135 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 365
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGGD
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.219e-21
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  141 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.122e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  141 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.122e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  141 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX299823 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.122e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  141 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 362
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX299823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
UBIQ_LEIMA6.406e-3493.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA2.061e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP8.103e-2979.22Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC6.860e-2876.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE2.607e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
NEDD8_DROME2.137e-2159.74NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB1_DESAN6.219e-2164.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ8.122e-2163.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ8.122e-2163.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH8.122e-2163.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC07002H02SK NTLeaf1 Citrus clementina cDNA clone C07002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299823 ID=CX299823; Name=CX299823; organism=Citrus clementina; type=EST; length=425bp
ACCCCGGGCTGCAGGCCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAG
CAGCTGGAGGACGGCCGCACCCTGGCCGATTATAACATCCAGAAGGAATC
CACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCAGATCTTCGTCA
AGACGTTGACCGGGAAGACGATTACCCTGGAGGTGGAGAGCTCCGACACG
ATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGA
CCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTC
TCGCCGATTACAACATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGT
CTCCGTGGTGGTGACTTCTAAAAAAATATATGTGGATGTGTCCGCGTTTG
ATTGGATGGCGCTAATAATAATTAA
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