CX299838

Overview
NameCX299838
Unique NameCX299838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299838 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:  130 CGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRV 396
            CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DCS++
Sbjct:   35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124
The following BLAST results are available for this feature:
BLAST of CX299838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT22_PARJU5.718e-1133.33Probable non-specific lipid-transfer protein 2 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003A10SK NTLeaf1 Citrus clementina cDNA clone C07003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299838 ID=CX299838; Name=CX299838; organism=Citrus clementina; type=EST; length=415bp
AACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAAT
CCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGG
TGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCC
TTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACC
GCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCC
CTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATC
CGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGT
CAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGT
GAAGTTGAGTTTGAG
back to top