CX299839

Overview
NameCX299839
Unique NameCX299839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-15
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 302
            P ASE+L+VV G +  G + ++ N TVY +TL+ GD+ +FP+G++HFQ N+G D  A  F +F S  PG      ALF + +   +++++   D ATV +LK
Sbjct:  103 PRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGSGIDDTILDKSMHTDQATVDQLK 204          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISS-SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN 236
            P A+EILLV  G +  GF SS   N ++ KTL KGD+ +FP+GL+HFQVN G   A+ F S +S NPG+ I    LF +
Sbjct:  117 PRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGS 195          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 302
            P ASE  +V+ G +  GF++S  ++ V  K L++GD+   PQGL+HF  N+G++ A  + S +S NPGL +   AL A  L   LV +T   D+ATV +++
Sbjct:  122 PRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAAPLPVDLVAKTLLTDEATVDKIR 222          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLK 302
            P A+EI+ V  G +  GF+++ AN ++ +T+ KG++ +FP+GL+HFQ NSG   AL   +FNS  PG Q     LF  A  L S  + +   +D   V+ +K
Sbjct:  115 PRATEIMFVAEGTLDVGFVTT-ANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIK 215          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGF-ISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLK 302
            P A+EI  V+ G +  GF IS+  N ++ K L KGD+ +FPQGL+HFQ N+G + A+   + +S NPG+     A+F +  ++S  ++ +   +D   + R++
Sbjct:  118 PRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQ 220          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 33/100 (33.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 302
            P ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL      +F  N+   ++ ++   D  T+++LK
Sbjct:  107 PRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTNIDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGIL 311
            P ++E+LLVV G ++ GFI ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S  PG+      +F   +   ++ ++   D  T+ +LK  L
Sbjct:  107 PRSAELLLVVDGALSVGFIDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTGIDDAVLAKSFKTDVPTILKLKANL 208          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 239
            P ASE+L V  G +  GF++S+  N ++ KTL +GD+ +FPQGL+HFQVN G   A+ F   +S NPG+      +F +N
Sbjct:  114 PRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSN 193          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.914e-12
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPG-LQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 314
            P A+EIL+V  G +  GF+SS+   N ++ K LK+GD+ +FP GL+HFQ+N     A+ F  F S NPG ++I D A+F +N  +  +++ +   LD   V+ L  + G
Sbjct:  116 PRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIAD-AVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVFG 223          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 233
            P A+E++ V+ G +  GFI++ AN +Y KT+  GD+ +FP+GLLHFQ N+G   A    +FNS  PG Q     LFA
Sbjct:  113 PRATEMVFVLQGTLDVGFITT-ANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFA 188          
The following BLAST results are available for this feature:
BLAST of CX299839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GL91_ORYSJ4.121e-1540.20Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GL112_ARATH4.556e-1449.37Putative germin-like protein subfamily 1 member 12... [more]
GL51_ORYSJ1.731e-1339.60Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL32_ORYSJ8.593e-1338.24Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL22_ORYSJ1.466e-1234.95Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.914e-1233.00Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ1.914e-1233.98Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL19_ARATH1.914e-1243.75Putative germin-like protein subfamily 1 member 9 ... [more]
GL16_ARATH1.914e-1238.53Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL52_ORYSJ3.265e-1245.45Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC07003A11SK NTLeaf1 Citrus clementina cDNA clone C07003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299839 ID=CX299839; Name=CX299839; organism=Citrus clementina; type=EST; length=431bp
ATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCC
GGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAA
GGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATT
CCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCT
GGACTCCAAATCACCGATTTCGCCTTATTTGCCAACAACTTGTCTTCCCA
ATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCA
AGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTCA
TTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTATTTGATTG
TTGGAATTCACGAGTTAGTATTTTCTCTGTT
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