CX299839

Overview
NameCX299839
Unique NameCX299839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLKGILG 314
            P A+E  LV+ G + AGF+ S    ++ K L++G++M+FP+ ++HFQ+N G   A  + +FNS NPG+      +F + +   ++E+   L  A ++RL+   G
Sbjct:  118 PRATETALVLAGRVYAGFVDSGGR-LFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGSGIREAVLERAFGLTPAELRRLEKRFG 220          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 314
            P  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +N  +  +L+ +   LD + VK L+   G
Sbjct:  113 PRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKFG 220          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 314
            P  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +N  +  +L+ +   LD + VK L+   G
Sbjct:  113 PRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKFG 220          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.570e-12
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLS 245
            P A+EIL V+ G +  GF++S+  N ++ K + KGD+ +FP+GL+HFQ N G   A+  V+ +S NPG+     A+F +  S
Sbjct:  118 PRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPS 199          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+EIL ++ G +  GF++S+  N ++ K L KGD+ +FPQGL+HFQ N G    +   + +S NPG+     A+F +   +S  ++ +   ++   V R++
Sbjct:  111 PRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQ 213          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.501e-12
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLK 302
            P A+EIL+VV G +  GF++S+   N ++ K L  GD+ +FP G++HFQVN G   A+ F    S NPG      A+F +  ++  +++ +   LD   VK L+
Sbjct:  115 PRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLE 218          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.241e-11
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF--ANNLSSQLVEQTTFLDDATVKRLK 302
            P A+EI+ VV G +  GF+++ AN ++ +T+ KG++ +FP+GL+HFQ N+G   A    + NS  PG Q    ALF  A  L S  + +   +D   V+ +K
Sbjct:  115 PRATEIIFVVEGSLDVGFVTT-ANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIK 215          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLV 257
            P A+E+ +V+ G    GF++S+     N ++ K L KGD+ +FPQGL+HFQ+N G    +G    +S NPG+     A+F     SQL+
Sbjct:  114 PRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLM 202          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILG 314
            P  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQ+N G   A+ F   +S N G+      +F +N  +  +L+ +   LD   VK L+   G
Sbjct:  113 PRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKFG 220          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.117e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 239
            P A+EIL+V  G +  GF++S+  N ++ K L +GD+ +FP+GL+HFQ N G   A+ F + +S NPG+      +F  N
Sbjct:  116 PRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGAN 195          
The following BLAST results are available for this feature:
BLAST of CX299839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GL24_ORYSJ4.265e-1233.65Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL120_ARATH4.265e-1236.11Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH4.265e-1236.11Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL23_ORYSJ5.570e-1240.24Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL21_ORYSJ7.274e-1233.01Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL17_ARATH9.501e-1236.54Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL13_ORYSJ1.241e-1137.25Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GLP1_MESCR1.621e-1138.20Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL116_ARATH1.621e-1135.19Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL111_ARATH2.117e-1140.00Germin-like protein subfamily 1 member 11 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC07003A11SK NTLeaf1 Citrus clementina cDNA clone C07003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299839 ID=CX299839; Name=CX299839; organism=Citrus clementina; type=EST; length=431bp
ATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCC
GGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAA
GGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATT
CCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCT
GGACTCCAAATCACCGATTTCGCCTTATTTGCCAACAACTTGTCTTCCCA
ATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCA
AGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTCA
TTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTATTTGATTG
TTGGAATTCACGAGTTAGTATTTTCTCTGTT
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