CX299839

Overview
NameCX299839
Unique NameCX299839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN 236
            P A+EIL V+ G +  GF++S+     N  + K L  GD+ +FPQGL+HFQ+N+GA  A+   + +S NPG+     A+F +
Sbjct:  118 PRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGS 199          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 239
            P A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FP+GL+HFQ N   D  A   V+ +S NPG      A+F +N
Sbjct:  114 PRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSN 197          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 239
            P A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N
Sbjct:  114 PRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSN 197          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+E  +V+ G +  GF++++ NT++ K L  G++ + P+GL+HFQ N G   A    SFNS  PG  +    LF +N  + + ++ +T   DD TV +LK
Sbjct:  115 PRATEAGVVIEGSVFVGFLTTN-NTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLK 215          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:  113 PRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLE 216          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:  113 PRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLE 216          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:  114 PRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLE 217          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 206
            P A+EIL+V  G +  GF++S+  N ++ K L +GD+ +FP+GL+HFQ N G   A+ F + +S NPG+
Sbjct:  116 PRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGV 184          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 206
            P +SE+L VV G + AGF+ ++ N ++   L+KGD+ +FP+GLLHF ++ G + A  F  +NS NPG+
Sbjct:  109 PRSSEMLFVVKGVVFAGFVDTN-NKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGV 175          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 34/100 (34.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 302
            P A+E+  +V G + +GF+ S+ N VY K +++G++M++P+GL+HFQ+N G   A      NS NPG+Q     +F + ++ +L+ +   L    +  LK
Sbjct:  118 PRATEVAHLVKGRVYSGFVDSN-NKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSGINEELLMKAFGLSLKQIGTLK 216          
The following BLAST results are available for this feature:
BLAST of CX299839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GL41_ORYSJ2.764e-1140.24Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL123_ORYSJ2.764e-1141.67Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL122_ORYSJ2.764e-1141.67Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]
GLT2_ARATH3.610e-1136.27Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL117_ARATH3.610e-1135.58Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH3.610e-1135.58Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH3.610e-1135.58Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL110_ARATH3.610e-1143.48Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL34_ARATH4.715e-1144.12Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL32_ARATH4.715e-1134.00Germin-like protein subfamily 3 member 2 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC07003A11SK NTLeaf1 Citrus clementina cDNA clone C07003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299839 ID=CX299839; Name=CX299839; organism=Citrus clementina; type=EST; length=431bp
ATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCC
GGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAA
GGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATT
CCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCT
GGACTCCAAATCACCGATTTCGCCTTATTTGCCAACAACTTGTCTTCCCA
ATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCA
AGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTCA
TTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTATTTGATTG
TTGGAATTCACGAGTTAGTATTTTCTCTGTT
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