CX299839

Overview
NameCX299839
Unique NameCX299839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 239
            P A+EIL V  G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F +N
Sbjct:  114 PRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSN 197          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 302
            P A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:  113 PRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLE 216          
BLAST of CX299839 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 PAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 317
            P ASE++LV+ G +  GF +++AN ++ K +++ ++ + P+GL HFQ+N GA  A     F+S +PGL    FALFA    +  +++ +T  + +  V  +K    G
Sbjct:  118 PRASELVLVLSGEVMVGF-TTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGEDEVGAIKSKFAG 223          
The following BLAST results are available for this feature:
BLAST of CX299839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GL121_ORYSJ4.715e-1141.67Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]
GL119_ARATH4.715e-1135.58Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL12_ORYSJ8.043e-1133.64Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC07003A11SK NTLeaf1 Citrus clementina cDNA clone C07003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299839 ID=CX299839; Name=CX299839; organism=Citrus clementina; type=EST; length=431bp
ATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGCC
GGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGAA
GGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAATT
CCGGCGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCCT
GGACTCCAAATCACCGATTTCGCCTTATTTGCCAACAACTTGTCTTCCCA
ATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTCA
AGGGTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTCA
TTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTATTTGATTG
TTGGAATTCACGAGTTAGTATTTTCTCTGTT
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