CX299851

Overview
NameCX299851
Unique NameCX299851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.520e-37
Identity = 83/154 (53.90%), Postives = 101/154 (65.58%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD-TKMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+AT IAVYANWSF               LY+ + YIPLD +KF IRY LSGKAW  ++E + AFT +KD+GKE+RE QWA AQRTLHGLQP +   +F E+    EL+Q+               ++TLKGHVESVV+LKGLDIDTIQQ YTV
Sbjct:  796 LVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQAKRRAEVVRLREINTLKGHVESVVKLKGLDIDTIQQHYTV 949          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.744e-36
Identity = 77/152 (50.66%), Postives = 98/152 (64.47%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTH-ELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            LIATLIA YA+W F               +Y+I+ YIPLD +KF  RY LSGKAW+ +IE R AFT +KD+G+ +RE QWA AQRTLHGL+PP++      T+ EL+++               +HTLKGHVESVV+LKGLDID + Q YTV
Sbjct:  798 LIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPESMFEDTATYTELSEIAEQAKKRAEVARLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.385e-36
Identity = 77/156 (49.36%), Postives = 102/156 (65.38%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDT---KMFTERT--HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYANW F               L++I+FY PLD  KFFIR+ LSG+AWD +++ + AFT ++++GK +RE QWA AQRTLHGLQ P+     +F +++   EL+++               L+TLKGHVESVV+LKGLDIDTI Q YTV
Sbjct:  796 LVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.977e-34
Identity = 81/154 (52.60%), Postives = 96/154 (62.34%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD-TKMFTER--THELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            LIATLIAVYANW F               LY+I+ Y PLD  KF IRY LSGKAW  + E + AFT +KD+GKE+RE QWA AQRTLHGLQP +   +F E+    EL+++               LHTLKGHVESVV+LKGLDI+T    YTV
Sbjct:  796 LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIET-PSHYTV 948          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.271e-33
Identity = 76/154 (49.35%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQP-PDTKMFTER--THELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L+ATLIAVYA+W+F               +Y+I+ Y P D +KF IRY LSGKAW  + + R AFT +KD+G  +RE QWA AQRTLHGLQP  D  +F E+    EL+++               LHTLKGHVESV +LKGLDIDT    YTV
Sbjct:  796 LVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKEDVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 949          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.472e-32
Identity = 77/154 (50.00%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDT-KMFTER--THELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            LIAT IAVY NW F               LY+I+FY PLD +KF IRY L+G AW  +I+ R AFT ++++G E+RE QWAHAQRTLHGLQ  +T  +  ER    EL+++               LHTLKGHVESVV+LKGLDI+T    YTV
Sbjct:  797 LIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTETANVVPERGGYRELSEIANQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETAGH-YTV 949          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.057e-22
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERT-HELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDI-DTIQQAYTV 455
            L+A++I+  ANW F               ++NI+ Y+ LD +KF +RYALSGK+WD ++E R A T +K+FG+E+R   WA  +RT HGL+     ++   +  ELN M               L TLKG VES  +LKG D+ D     YT+
Sbjct:  809 LVASVISAMANWPFAGIRSIGWGWTGVIWIFNIVTYMLLDPIKFLVRYALSGKSWDRMVEGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVYERNSATELNNMAEEAKRRAEIARMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961          
BLAST of CX299851 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.520e-18
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 3
Query:    3 LIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFVKFFIRYALSGKAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRT-----LHGLQPPDTKMFTERTHELNQMXXXXXXXXXXXXXXXLHTLKGHVESVVRLKGLDIDTIQQAYTV 455
            L ATLIAVYAN SF               LY++IFYIPLD +KF   YALSG+AW+LV++++ AFT +KD+GK+        +QR+     L G +        E+T    ++               +H++  H+ESV++LK +D   I+ A+TV
Sbjct:  803 LAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFVFHYALSGEAWNLVLDRKTAFTYKKDYGKDDGSPNVTISQRSRSAEELRGSR-SRASWIAEQTRRRAEI----------ARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947          
The following BLAST results are available for this feature:
BLAST of CX299851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PMA5_ARATH1.520e-3753.90ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA6_ARATH3.744e-3650.66ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT6.385e-3649.36Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA2_ARATH5.977e-3452.60ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH2.271e-3349.35ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH1.472e-3250.00ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]
PMA7_ARATH1.057e-2237.91ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMA10_ARATH3.520e-1836.54ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC07003B12SK NTLeaf1 Citrus clementina cDNA clone C07003B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299851 ID=CX299851; Name=CX299851; organism=Citrus clementina; type=EST; length=502bp
AACTGATTGCTACTCTGATTGCCGTTTATGCAAACTGGAGTTTTGCTGCA
ATTGAAGGGATTGGGTGGGGTTGGGCCGGTGTGGTCTGGCTTTACAACAT
CATCTTCTACATCCCACTTGATTTCGTTAAGTTCTTCATACGCTATGCTC
TGAGTGGGAAGGCCTGGGATCTTGTTATCGAGCAGAGGATTGCTTTCACA
AGGCAAAAGGATTTTGGTAAGGAACAACGTGAGCTTCAATGGGCACATGC
ACAAAGAACATTGCATGGGTTGCAACCACCTGATACCAAGATGTTCACCG
AGCGAACTCATGAACTTAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCT
GAAATTGCTAGGTTAAGAGAACTCCATACGTTAAAAGGTCATGTGGAATC
AGTAGTGAGATTGAAAGGCCTTGACATAGACACGATTCAGCAAGCTTACA
CGGTCTAAGAGATCACCTATTGACGTAATCGTTATCTATTAAGAAACATT
TC
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