CX299887

Overview
NameCX299887
Unique NameCX299887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK AAG+I NLNP NA  LP  C V+IPYKIS +T+C  ++
Sbjct:   71 QAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:   70 QAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C  V+
Sbjct:   69 QAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q AC CLK AAG+I  +N   A GLP  CGV+IPYKIS STDC KV+
Sbjct:   68 QIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CX299887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NLTP3_LENCU4.378e-1161.70Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP5_LENCU5.718e-1163.83Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_PYRCO9.753e-1159.57Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_TOBAC9.753e-1163.83Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionC07003F04SK NTLeaf1 Citrus clementina cDNA clone C07003F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299887 ID=CX299887; Name=CX299887; organism=Citrus clementina; type=EST; length=415bp
AGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTGAA
CACAAGGCAAGATTTCATTTAATAAACAGAATAGACACAAACTGACGATG
ACATGAAAAGCAAAGACAATAAGACACAACATGAAACGAGGGCGGGAACG
AGACTCGCAGTACAAAGTGTAGAGAGAGACTCATAATTCGGACACAAAAA
TGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAATATGAAAA
TCAACAGCCCAGATTCCTGTTCACCGGACCTTATAGCAGTCAGTGGAGAT
GCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCGTGGAAGACCAACAG
CATTATTAGGGTTGAGGTTAGGGATTGATCCGGCGGCTTGCTTCAAGCAG
TTGCATGCAGTTTGG
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