CX299889

Overview
NameCX299889
Unique NameCX299889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA 549
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   ++Y + Q LG+I  + ++K         + GG     H                  TF LVYTV++
Sbjct:   51 WRAGIAEFIATFLFLYITVLTVMGVKRSPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVFS 194          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK--------VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA 549
            ++A +AEFI+T LF++  V + +   +     A    G+  IA   G  +F  V   A ISGGH+NPAVTFGL L  ++++   ++Y + Q LG+I  + ++K         + GG     H                  TF LVYTV++
Sbjct:   51 WRAGIAEFIATFLFLYITVLTVMGVKRSPNMCA--SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHG----YTKGSGLGAEIIGTFVLVYTVFS 194          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA 453
            FK   AEF+ T   V  G GSA+  +           GL+ ++   G  +         ISGGH NPAV+ GLA+ G++   + + Y IAQ+ G+I+A+ +L V+  G A
Sbjct:    2 FKKLCAEFLGTCWLVLGGCGSAVLASAFPQVGI----GLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKA 107          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 441
            ++A LAEF+ +LL+   G+G+++ +       A  P G++  A+  G A    V    ++SGGH+NPA+T    L  Q+++   + Y +AQLLG++  + +L  VT
Sbjct:   10 WRAILAEFLGSLLYTLLGLGASLRW-------APGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVT 108          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 43/107 (40.19%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  139 AEFISTLLFVFAGVGSAIAFNKMTADAALDPS---GLVAIAICHGFA-LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG 447
            AEF  T   VF G GSAI        AA  P    G + +A+  G   L +A A+G  ISGGH NPAV+  L + G++     I YW+AQ+LG+I  + +L V+  G
Sbjct:    7 AEFFGTFWLVFGGCGSAIL-------AAAFPELGIGFLGVALAFGLTVLTMAYAVGG-ISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASG 105          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  136 LAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT 441
            L E + + LF+F G  S I     T        GL+  A+ HG AL + +A   NISGGH NPAV+    L G + ++  + YW++QLLG ++ + L K V+
Sbjct:   39 LVELLGSALFIFIGCLSVIENGTDT--------GLLQPALAHGLALGLVIATLGNISGGHFNPAVSLAAMLIGGLNLVMLLPYWVSQLLGGMLGAALAKAVS 132          
The following BLAST results are available for this feature:
BLAST of CX299889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PIP11_VICFA7.167e-1131.33Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH7.167e-1131.33Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
AQPZ2_RHIME7.167e-1134.55Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
MIP_CHICK9.361e-1133.02Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQPZ_BRUSU9.361e-1140.19Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
AQP8_HUMAN9.361e-1137.25Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003F06SK NTLeaf1 Citrus clementina cDNA clone C07003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299889 ID=CX299889; Name=CX299889; organism=Citrus clementina; type=EST; length=561bp
TATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTA
TTCTTTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCG
ATGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATC
TCAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAA
CAAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCG
CTATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAAC
ATCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGG
TGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTC
TTGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTG
GCAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGT
TGTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCA
CGGCAGCTGAC
back to top