CX299889

Overview
NameCX299889
Unique NameCX299889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.118e-35
Identity = 74/164 (45.12%), Postives = 104/164 (63.41%), Query Frame = 1
Query:   70 STMAIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            +T   +FGR D++    S +A LAEF ST +FVFAG GS +A  K+  D+A     L+A+A+ H FALF AV+   ++SGGHVNPAV+FG  +GG+I+++  ++YWIAQLLGSIVA+ +L++VT  +     +                 TFGL+YTVY TA D
Sbjct:    2 ATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAID 165          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.906e-33
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   79 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            A  FGR D++    S +A LAEF+ST +FVFAG GS +A +K+  D A       P GLV +A+ H  ALF AV+   N+SGGHVNPAVTF   +GG+I+++  I+YW+AQL+G+I+A  LL++ T GL     +                 TF LVY VY+TA D
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAID 173          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.701e-33
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1
Query:   91 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            GR +D+    + +A ++EF++T +FVFA  GS ++  K+  D +  P GLVA+++ H  AL VAVA+  NISGGHVNPA+TFG  LGG+++++  +FYW+AQLLG++VA+ LL++ TGG+  P                    TFGL+Y  YAT  D
Sbjct:   15 GRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQDMST-PGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVID 170          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.484e-32
Identity = 73/166 (43.98%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   79 AIAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALD-----PSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            A  FGR D++    S +A LAEF+ST +FVFA  GS ++ +K+  + A       P GL+ +A+ H FALF AV+   N+SGGHVNPAVTFG  +GG++T +  I+YWIAQLLG+I+A  LL++ T G+                       TFGLVY VY+T  D
Sbjct:    8 AYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLID 173          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.256e-31
Identity = 68/157 (43.31%), Postives = 97/157 (61.78%), Query Frame = 1
Query:   91 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +    GLVA+A+ H  AL VAVA+  NISGGHVNPAVTFG  +GG+++++  + YW+AQLLG++ A+ LL++ TGG+  P                    TFGL+Y  YAT  D
Sbjct:   14 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDMST-AGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVID 169          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.894e-30
Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 1
Query:   91 GRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAAL--DPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            GR +D+    + +A ++EFI+T +FVFA  GS ++  KM  D +      GLVA+A+ H   L VAVA+  N+SGGHVNPAVTFG  +GG+++++  + YW AQLLG++ A+ LL++ TGG   P                    TFG VY  YAT  D
Sbjct:   16 GRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVD 174          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 9.004e-30
Identity = 68/146 (46.58%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  109 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVY 546
            FS  + +AY AEF ST LFVF  VGS I+   +T D   D S L+A A+   F LF AV I A++SGGHVNPAVTF  A+GG IT+ + IFYW +Q+LGS  A  +L  ++ G AVPT                   TF +VYTV+
Sbjct:   12 FSPPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH 157          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.836e-29
Identity = 68/160 (42.50%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   82 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            I  G   ++      KA + EFI+T LFVFAGVGSA+A + +  +  +   GL A+A+ H F + V ++ G +ISGGH+NPAVT GL LGG I++     YWI QLL S  A FLL  +TGG+  P H                  TF L++TVYAT  D
Sbjct:    4 IELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTLV---GLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVD 159          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.877e-27
Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  109 FSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG-LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVY 546
            FS  S ++YLAEFIST LFVF  VGSAI+   +T       +G LVA A+   F LF AV I A++SGGHVNPAVTF  A+GG+I + + +FYW +QLLG+  A   L + + G  VPT                   TF LVYTV+
Sbjct:   14 FSAPSLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVH 160          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.589e-26
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  118 GSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            G+ +A L+EF++T +FVFA  GS     KM  D      GL+ +A+ H  AL  AVA+  N SGGHVNPAVTFG+ +G +I+      YW AQLLG+++A  LL++ +GG+                       TFGLVYTVYATA D
Sbjct:   26 GATRAALSEFVATAVFVFAAEGSVYGLWKMYRDTGT-LGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVD 172          
The following BLAST results are available for this feature:
BLAST of CX299889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIPA_PHAVU7.118e-3545.12Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_ARATH3.906e-3344.58Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ORYSJ8.701e-3343.31Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH1.484e-3243.98Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP31_MAIZE1.256e-3143.31Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP32_MAIZE6.894e-3041.51Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP51_ORYSJ9.004e-3046.58Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH5.836e-2942.50Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP51_MAIZE1.877e-2746.26Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP32_ORYSJ1.589e-2643.24Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC07003F06SK NTLeaf1 Citrus clementina cDNA clone C07003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299889 ID=CX299889; Name=CX299889; organism=Citrus clementina; type=EST; length=561bp
TATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTA
TTCTTTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCG
ATGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATC
TCAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAA
CAAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCG
CTATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAAC
ATCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGG
TGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTC
TTGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTG
GCAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGT
TGTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCA
CGGCAGCTGAC
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