CX299889

Overview
NameCX299889
Unique NameCX299889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.113e-25
Identity = 67/161 (41.61%), Postives = 87/161 (54.04%), Query Frame = 1
Query:   82 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG-LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            +A G   ++   G  +A +AE + T LFVF+GVGSA+A  K+         GL A+A  H   + V V+ G ++SGGH+NPAVT GLA GG IT+     Y  AQLLGS +A  LL  +TGG  AVP H                  TF L++ VYAT  D
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTI-MGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVD 163          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.943e-24
Identity = 65/160 (40.62%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   85 AFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK-VVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            A G   ++   G  +A LAE I T LFVFAGVGSA+A  K+         GL A+A+ H   + V V+ G ++SGGH+NPAVT GLA  G+IT+     Y  AQLLGS +A  LL  +      VP H                  TF L++ VYAT  D
Sbjct:    5 ALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVD 164          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.314e-24
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   94 RFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            +F    S+ + + Y++EFIST  FV A VGS ++  K+ A     P G++  AI +  AL  +V I  N+SGGHVNPAVTF +A+ G+I++ T +FYW +Q++ S++A  +LKV      VP +                   F LVYTV+ TA+D
Sbjct:   12 KFQGVLSMNALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASD 166          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            F+  L E + T LFVF GVG+A+  +  T   +     L A+A+     + V    G +ISGGHVNPAVT  LA+GG +T+     Y  AQ+L S  A FLL+ +TGGLA P H                  TF L++ +YAT  D
Sbjct:   18 FRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILD 162          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.640e-21
Identity = 63/169 (37.28%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   76 MAIAFGRFDDSFS------LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            MA    +  DSF       +G  +A LAE + T LFVF GV +A+A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT GL + G IT L  + Y  AQLL S  A  LL+ ++GG+  P H                  TF L++  YA   D
Sbjct:    1 MAKLMNKLVDSFEHDEIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILD 169          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = 1
Query:  118 GSFKAYLAEFISTLLFVFAGVGSAIAFN-KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            G  +A LAE + T +FVF GV + +A      A AA+  + L  +AI    A  V V  G ++SGGH+NPAVT  L   G IT      Y  AQLL S +A  LL+ +TGG+A P H                  TF L++ VYAT  D
Sbjct:   17 GCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILD 165          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.468e-20
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  115 LGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADA-ALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            +G  +A LAE + T LFVF GV +++A         A+  + L A+AI H  A  V V  G ++SGGH+NPAVT G+ + G IT L  + Y  AQLL S +A  LL+ ++GG+  P H                  TF L++  YA   D
Sbjct:   22 VGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILD 171          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 56/160 (35.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   82 IAFGRFDDSFSLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYATAAD 561
            +  G   +++  G  +A   E + T LFVF GV S I   K  A  A + + + A A+     + V    G ++SGGH+NPAVT  LA+GG IT+     Y  AQL GS +A  LL+ +TGG A P H                  TF L+  + AT  D
Sbjct:    9 LELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGK-AAGGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILD 167          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  103 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG+I    L+K
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVK 149          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  103 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS-----GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            D+  LG    ++A +AEFI+TLLF++  + + I +   T D AL+P      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  ++T++  + Y +AQ LG+I    L+K
Sbjct:   27 DATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQT-DPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVK 143          
The following BLAST results are available for this feature:
BLAST of CX299889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIP43_ORYSJ5.113e-2541.61Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE1.943e-2440.63Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP51_ARATH3.314e-2438.46Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP43_MAIZE1.539e-2139.04Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP41_MAIZE7.640e-2137.28Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP41_ORYSJ2.223e-2038.93Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE6.468e-2037.33Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP42_ORYSJ2.458e-1935.00Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ1.491e-1642.02Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP25_ARATH1.947e-1640.68Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003F06SK NTLeaf1 Citrus clementina cDNA clone C07003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299889 ID=CX299889; Name=CX299889; organism=Citrus clementina; type=EST; length=561bp
TATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTA
TTCTTTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCG
ATGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATC
TCAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAA
CAAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCG
CTATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAAC
ATCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGG
TGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTC
TTGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTG
GCAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGT
TGTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCA
CGGCAGCTGAC
back to top