CX299889

Overview
NameCX299889
Unique NameCX299889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  103 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT--------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T        ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG++    L+K
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVK 151          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  103 DSFSLGS---FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            D+  LGS   ++A +AEFI+TLLF++  V + I +   T      ADAA    G++ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K
Sbjct:   31 DAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVK 149          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 54/148 (36.49%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVT-----GGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYAT 552
            +KA  AEF++TL+FV  GVGS I +        +D   +V I++C G ++   V    +ISGGH+NPAVT  +    +I+I   +FY IAQ LG+I+ + +L +VT     GGL V T                   TF LV+T++A+
Sbjct:   35 WKAVSAEFLATLIFVLLGVGSTINWGGSENPLPVD---MVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTT--VHGNLTAGHGLLVELIITFQLVFTIFAS 177          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.400e-16
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKM------TADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEFI+TLLF++  V + I +         T DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK 148          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSI----VASFLLKVVTGGLAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA 549
            ++A +AEFI+TLLF++  V + I   K T     D  GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I         +K     L    +                  TF LVYTV++
Sbjct:   37 YRALIAEFIATLLFLYVTVATVIGHKKQTGPC--DGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVFS 180          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEFI+TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K
Sbjct:   41 YRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK 149          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL 450
            ++A +AEF++ +LFVF  +GSA+ FN       TA AA D    V +++  G ++        +ISG H+NPAVT GL L  QI+IL  + Y IAQ +G+IVA+ +L  +T  L
Sbjct:   11 WRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDN---VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSL 121          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEFI+TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y IAQ LG+I    L+K
Sbjct:   40 YRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVK 148          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGG----LAVPTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA 549
            ++A +AEFI+TLLF++  V + I + K T   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL L  ++++L  + Y IAQ  G+I    L+K    G         ++                 TF LVYTV++
Sbjct:   39 WRAAIAEFIATLLFLYITVATVIGYKKETDPCA--SVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFS 182          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.812e-15
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLAV----PTHNXXXXXXXXXXXXXXXXXTFGLVYTVYA 549
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y  AQ LG+I    L+K    G         +                  TF LVYTV++
Sbjct:   40 YRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVFS 191          
The following BLAST results are available for this feature:
BLAST of CX299889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PIP22_MAIZE1.947e-1640.50Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_MAIZE1.947e-1642.02Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQP4_MOUSE3.322e-1636.49Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
PIP22_ORYSJ7.400e-1641.28Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP27_ARATH1.649e-1536.30Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP23_MAIZE1.649e-1541.28Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
AQP1_CANFA1.649e-1541.23Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
PIP24_MAIZE2.153e-1541.28Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP1_ATRCA2.153e-1536.99Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_MAIZE2.812e-1533.55Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07003F06SK NTLeaf1 Citrus clementina cDNA clone C07003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299889 ID=CX299889; Name=CX299889; organism=Citrus clementina; type=EST; length=561bp
TATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTA
TTCTTTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCG
ATGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATC
TCAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAA
CAAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCG
CTATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAAC
ATCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGG
TGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTC
TTGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTG
GCAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGT
TGTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCA
CGGCAGCTGAC
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