CX299889

Overview
NameCX299889
Unique NameCX299889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.812e-15
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTA------DAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEF++TLLF++  V + I +   T       DAA    G++ IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  I Y +AQ LG++    L+K
Sbjct:   35 YRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAVCGVALVK 143          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.812e-15
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEF++TLLF++  V + I +   +      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K
Sbjct:   41 YRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVK 149          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.672e-15
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSG----LVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGL 450
            ++A +AEF++ +LFVF  +G+A+ FN    + A    G    +V +++  G ++        ++SG H+NPAVT G  L  QI+IL  + Y IAQ LG++VA+ +L  +T GL
Sbjct:   11 WRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGL 123          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEFI+TLLF++  V + I +   ++       G + IA   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG IV   ++K
Sbjct:   37 YRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVK 139          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPS------GLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEF++TLLF++  V + I +   T  AA  P       G++ IA   G  +F+ V   A +SGGH+NPAVTFGL L  +++++  + Y +AQ LG+I    L+K
Sbjct:   36 YRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVK 144          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMT------ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEF++TLLF++  V + I +   T      ADAA    G++ IA   G  +F+ V   A +SGGH+NPAVT GL L  +++++  + Y  AQ LG+I    L+K
Sbjct:   38 YRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVK 146          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  112 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLL 429
            SL  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  +FY  AQL+G+I  + +L
Sbjct:    7 SLAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFN-----KMTADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLK 432
            ++A +AEFI+TLLF++  V + I +      K+  +   D  G++ IA   G  +F+ V   A ISGGH+NPAVTFGL LG +++++  + Y IAQ  G+I  + L K
Sbjct:   39 YRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAK 146          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  112 SLGSFKAYLAEFISTLLFVFAGVGSAIAFNKMTADAALDPSGL---VAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKVVTGGLA 453
            S+  FKA  AEF++TL+FVF G+GSA+ +          PS L   + I+I  G A+         +SGGH+NPA+T  L +G QI++L  IFY  AQL+G+I  + +L  +  G A
Sbjct:    7 SVAFFKAVFAEFLATLIFVFFGLGSALKW----------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNA 113          
BLAST of CX299889 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  124 FKAYLAEFISTLLFVFAGVGSAIAFNKMT----ADAALDPSGLVAIAICHGFALFVAVAIGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVASFLLKV 435
            ++A +AEFI+TLLF++  V + I F   T       A    GL+ I+   G  +F+ V   A ISGGH+NPAVTFGL L  +++++  + Y +AQ LG+     L+KV
Sbjct:   37 YRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKV 144          
The following BLAST results are available for this feature:
BLAST of CX299889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PIP25_ORYSJ2.812e-1539.45Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ2.812e-1538.53Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
AQPA_RANES3.672e-1537.17Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
PIP26_ORYSJ4.796e-1538.83Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE4.796e-1538.53Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP24_ORYSJ8.181e-1538.53Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_RAT8.181e-1541.28Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
PIP27_MAIZE1.069e-1439.81Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
AQP5_MOUSE1.069e-1440.17Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP26_ARATH1.396e-1439.81Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC07003F06SK NTLeaf1 Citrus clementina cDNA clone C07003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299889 ID=CX299889; Name=CX299889; organism=Citrus clementina; type=EST; length=561bp
TATCTTCTTCTTCTTCTTAAGAAAGACTCGAGAGAGTTTTTTTTCCCCTA
TTCTTTAGCTCTTTCTTGATCAACAATGGCTATTGCCTTCGGCCGCTTCG
ATGATTCTTTCAGCTTAGGCTCCTTCAAGGCCTATCTTGCTGAGTTTATC
TCAACTTTGCTCTTTGTTTTCGCCGGCGTTGGCTCGGCCATTGCTTTCAA
CAAGATGACAGCAGATGCAGCACTTGATCCATCAGGGCTAGTAGCCATCG
CTATTTGCCATGGATTTGCTCTATTTGTCGCAGTTGCAATTGGTGCTAAC
ATCTCAGGTGGCCACGTCAACCCAGCCGTCACCTTTGGATTGGCTCTTGG
TGGCCAAATCACCATCCTCACTGGCATCTTCTACTGGATTGCCCAACTTC
TTGGCTCTATTGTTGCCAGCTTCCTCCTCAAAGTTGTCACTGGAGGCTTG
GCAGTTCCTACCCACAATGTTGCTGCTGGAGTTGGAGCCATTGAAGGAGT
TGTGATGGAGATCATCATCACATTTGGTTTGGTCTACACGGTCTATGCCA
CGGCAGCTGAC
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