CX299891

Overview
NameCX299891
Unique NameCX299891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.378e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  208 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.378e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  199 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.412e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   46 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  197 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  196 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.526e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.526e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.526e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CX299891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2A_PINSY3.378e-3597.18Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PEA3.378e-3597.18Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY4.412e-3597.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC5.762e-3597.18Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC5.762e-3597.18Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP5.762e-3597.18Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC5.762e-3597.18Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC7.526e-3597.18Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC7.526e-3597.18Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC7.526e-3597.18Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003F08SK NTLeaf1 Citrus clementina cDNA clone C07003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299891 ID=CX299891; Name=CX299891; organism=Citrus clementina; type=EST; length=355bp
TTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAG
GTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTT
CTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCG
ACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAAC
TTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGG
TTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTT
GAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAA
AAAAA
back to top