CX299891

Overview
NameCX299891
Unique NameCX299891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.419e-33
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  195 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.854e-33
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  195 DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.421e-33
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.130e-33
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.130e-33
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.393e-33
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  195 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.393e-33
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  196 DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.393e-33
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  158 DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.044e-33
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  186 DPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.044e-33
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   80 DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
The following BLAST results are available for this feature:
BLAST of CX299891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_GOSHI1.419e-3394.37Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_MAIZE1.854e-3392.96Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC2.421e-3392.96Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP4.130e-3392.96Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_APIGR4.130e-3392.96Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU5.393e-3391.55Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PINTH5.393e-3394.37Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_PEA5.393e-3392.96Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN7.044e-3392.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PINSY7.044e-3394.37Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionC07003F08SK NTLeaf1 Citrus clementina cDNA clone C07003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299891 ID=CX299891; Name=CX299891; organism=Citrus clementina; type=EST; length=355bp
TTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAG
GTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTT
CTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCG
ACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAAC
TTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGG
TTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTT
GAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAA
AAAAA
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