CX299891

Overview
NameCX299891
Unique NameCX299891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.044e-33
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  197 DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  193 DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  193 DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   54 DPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.017e-31
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  196 DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.266e-31
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 215
            DPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  195 DPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.274e-30
Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 212
            DPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  195 DPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.520e-30
Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 212
            DPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  198 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.624e-29
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 212
            DPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  198 DPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX299891 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.520e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 3
Query:    3 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 209
            DPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  186 DPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CX299891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_PETSP7.044e-3391.55Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ1.569e-3290.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.569e-3290.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.569e-3292.96Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_WHEAT1.017e-3190.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA2.266e-3185.92Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC4.274e-3088.57Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA9.520e-3088.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU1.624e-2987.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO1.520e-2784.06Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07003F08SK NTLeaf1 Citrus clementina cDNA clone C07003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299891 ID=CX299891; Name=CX299891; organism=Citrus clementina; type=EST; length=355bp
TTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAG
GTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTT
CTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCG
ACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAAC
TTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGG
TTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTT
GAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAA
AAAAA
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