CX299895

Overview
NameCX299895
Unique NameCX299895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 3
Query:   72 LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-YNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 371
            L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++ +N    W   W++W+GP IGA +A   ++F++
Sbjct:  152 LLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN----WRHHWVYWLGPLIGAGMAGALYEFVM 244          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3
Query:   51 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 350
            GYS    L  EII T   +  +  +T  +       VPV  AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G AI A
Sbjct:  126 GYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPILGGAIGA 218          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 41/133 (30.83%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    9 YYTRYGGGANELADGY-STGVG------------LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            Y    G    +LA G+ S G G               E++ T + ++ +  +T  K  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    WLFWV P +G  +    ++ +
Sbjct:  101 YLIASGAAGFDLAKGFASNGYGAHSPGQYNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAIGQLWLFWVAPLLGGVLGGVIYRVL 226          
The following BLAST results are available for this feature:
BLAST of CX299895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TIP32_ORYSJ6.516e-1136.63Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
AQPZ1_AGRT56.516e-1139.60Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
AQPZ_RHOPA8.510e-1130.83Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003G01SK NTLeaf1 Citrus clementina cDNA clone C07003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299895 ID=CX299895; Name=CX299895; organism=Citrus clementina; type=EST; length=543bp
AAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAGCTGGCCGAT
GGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCGGCACCTTTGT
GTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAG
ACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTC
ATGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGC
AAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATG
ATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCT
TTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTC
ATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATC
CACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAA
GGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGG
back to top