CX299895

Overview
NameCX299895
Unique NameCX299895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 1.870e-58
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 3
Query:    3 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 398
            K  Y   GGGAN +A GYSTG  L AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS+GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  143 KHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 4.605e-57
Identity = 102/132 (77.27%), Postives = 114/132 (86.36%), Query Frame = 3
Query:    3 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 398
            K  Y ++GGGAN +A GY+ G    AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK + WDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  143 KGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.310e-55
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  158 YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 9.602e-55
Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  159 YQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.602e-55
Identity = 99/122 (81.15%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  159 YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.387e-53
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+I+NKD AWDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  158 YQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.811e-53
Identity = 96/122 (78.69%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AW+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  161 YMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 2.365e-53
Identity = 96/125 (76.80%), Postives = 109/125 (87.20%), Query Frame = 3
Query:    3 KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            K  Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+  AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  157 KGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.365e-53
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  158 YQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.365e-53
Identity = 97/122 (79.51%), Postives = 108/122 (88.52%), Query Frame = 3
Query:   12 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 377
            Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  158 YQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
The following BLAST results are available for this feature:
BLAST of CX299895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
PIP26_ORYSJ1.870e-5881.82Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA4.605e-5777.27Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP13_ARATH4.310e-5581.97Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH9.602e-5581.15Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH9.602e-5581.15Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP12_ARATH1.387e-5379.51Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ1.811e-5378.69Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ORYSJ2.365e-5376.80Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_VICFA2.365e-5379.51Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.365e-5379.51Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionC07003G01SK NTLeaf1 Citrus clementina cDNA clone C07003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299895 ID=CX299895; Name=CX299895; organism=Citrus clementina; type=EST; length=543bp
AAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAGCTGGCCGAT
GGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCGGCACCTTTGT
GTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAG
ACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTC
ATGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGC
AAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATG
ATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCT
TTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTC
ATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATC
CACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAA
GGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGG
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