CX299895

Overview
NameCX299895
Unique NameCX299895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   42 LADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 359
            +A G +   G+  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+      +   W++W GP IG  +A F +
Sbjct:  133 VAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   27 GGANELADGYSTGV----GLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            GG    A   S GV     +  EI+ TF LVYTV++ A DPK+      + ++APL IG  V    L      G  +NPA S G AV+      W + W++WVGPFIGAAIAA  +  I
Sbjct:  126 GGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 3
Query:   30 GANELADG-YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 371
            G  EL+ G YS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    WLFWV P +GA I A   + +L
Sbjct:  118 GYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   42 LADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 359
            +A G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+      +   W++WVGP +G A+A   +
Sbjct:  133 VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = 3
Query:   51 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            GYS    L  EI+   + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  D A    WLFWV P +GA + A  ++ I
Sbjct:  127 GYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 39/115 (33.91%), Postives = 54/115 (46.96%), Query Frame = 3
Query:   27 GGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 371
            G  +    GY     L  E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+           WLFW+ P  GA +A F +  +L
Sbjct:  128 GFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   54 YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   54 YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A  ++ +
Sbjct:  132 YSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGALAYRLV 229          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 3
Query:   51 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            GYS    L  E++ T   +  +  +T        S VPV  AP+ IG  + ++HL +IP+T T +NPARS G A ++  D A    WLFWV P IGA IA    + +
Sbjct:  126 GYSLTAALVTEVVMTAFFLLIILGSTH-------SRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQA-LFVGDWAISQLWLFWVAPLIGAVIAGIVWKIV 224          
BLAST of CX299895 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   27 GGANELADGYSTGVG----LAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 368
            GG    A G S GVG    L  EI+ TF LVYTV++ A DPK  +    +  +AP+ IGF V    LA    +G  +NPA + G AV+      W + W++W GP IG  +A   + F+
Sbjct:  127 GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLIGGGLAGIIYDFV 238          
The following BLAST results are available for this feature:
BLAST of CX299895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
TIP1_TOBAC4.081e-1340.19Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP13_ARATH4.081e-1341.18Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQPZ_BRUME4.081e-1338.26Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
TIP22_ARATH5.330e-1339.25Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQPZ_VIBVY5.330e-1336.79Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
AQPZ_SYNY35.330e-1333.91Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_BORPA5.330e-1336.19Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR5.330e-1336.19Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
AQPZ1_RHIME5.330e-1338.32Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
TIP12_ARATH9.092e-1338.66Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionC07003G01SK NTLeaf1 Citrus clementina cDNA clone C07003G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299895 ID=CX299895; Name=CX299895; organism=Citrus clementina; type=EST; length=543bp
AAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGAGCTGGCCGAT
GGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCGGCACCTTTGT
GTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAG
ACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTC
ATGGTACACTTGGCCACAATCCCAATCACTGGCACTGGCATTAACCCAGC
AAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATG
ATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCT
TTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTC
ATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATC
CACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAA
GGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGG
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