CX299901

Overview
NameCX299901
Unique NameCX299901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.304e-61
Identity = 107/118 (90.68%), Postives = 117/118 (99.15%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            +P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  161 SPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.316e-61
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 3
Query:    9 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.316e-61
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 3
Query:    9 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.362e-61
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            N SLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  128 NQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.142e-60
Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  148 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.772e-60
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  139 NPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.063e-59
Identity = 109/118 (92.37%), Postives = 114/118 (96.61%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  111 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.388e-59
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  150 NPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.368e-59
Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  149 NPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.093e-59
Identity = 106/118 (89.83%), Postives = 114/118 (96.61%), Query Frame = 3
Query:    3 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 356
            NPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  147 NPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of CX299901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2A_PYRPY3.304e-6190.68Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.316e-6195.69Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.316e-6195.69Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_SOYBN7.362e-6194.92Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_POLMU2.142e-6090.68Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_SOYBN4.772e-6093.22Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA1.063e-5992.37Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_PETSP1.388e-5990.68Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT2.368e-5990.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR3.093e-5989.83Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07003G08SK NTLeaf1 Citrus clementina cDNA clone C07003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299901 ID=CX299901; Name=CX299901; organism=Citrus clementina; type=EST; length=497bp
GAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGC
CAGGTGGTCTTGATGGGAGCTGTTGAGGGTTACAGAATTGCTGGAGGGCC
GCTCGGTGAAGTGACCGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAA
ATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCA
GGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGG
CTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCC
GGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGA
TATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGA
TTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAAA
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