CX299901
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.007e-17 Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 126 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 320 YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA HLADP +NN Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 9.421e-16 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 314 IW +V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 192 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.106e-15 Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 314 IW +V+++G +E R A + LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 189 IWI-EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 7.465e-13 Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 3 Query: 99 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 317 P GEV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12 Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3 Query: 99 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 317 P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 308 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 153 LFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.705e-12 Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 308 ++ ++VL+G EG R A P TDP+ YPGG FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 153 LFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 317 IW +V+L+G E YR T+P YPGG FDPL LA +D E LK EIK+ RLAM S FG+ VQA+ TG+G L +LA AD +NN Sbjct: 188 IWI-EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276
BLAST of CX299901 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11 Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 39 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 290 IW +V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F +QA TGKGP+ LA Sbjct: 193 IWI-EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272 The following BLAST results are available for this feature:
BLAST of CX299901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX299901 ID=CX299901; Name=CX299901; organism=Citrus clementina; type=EST; length=497bpback to top |