CX299906

Overview
NameCX299906
Unique NameCX299906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 387
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DI K+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 387
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DI K+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 68/116 (58.62%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 387
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DI K+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.142e-34
Identity = 66/115 (57.39%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N++ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX299906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE1.762e-3558.62Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN1.762e-3558.62Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN1.762e-3558.62Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB1.142e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC07003H02SK NTLeaf1 Citrus clementina cDNA clone C07003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299906 ID=CX299906; Name=CX299906; organism=Citrus clementina; type=EST; length=491bp
ACCCCGGGCTGCAGGCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTCACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
GAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATC
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