CX299906

Overview
NameCX299906
Unique NameCX299906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.544e-34
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+ K+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.323e-34
Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   46 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            SFK ++ L+ RLAES  I  KYP RIPVI EK  KTD+P I KKK+LVP D+SVGQF+Y++  R+ LS  KA+FVFV NTLP T ALM ++YE  KD+DGF+YM YS E TFG
Sbjct:    3 SFKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+ KKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+ KKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+ KKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+ KKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 9.667e-34
Identity = 65/115 (56.52%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K EHP E+R +E  +IR+KYPDR+PVIVEKA K  + D+ KKKYLVP+DL+VGQF +++RKRI L AE A+F FV N +PPT A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.182e-31
Identity = 62/115 (53.91%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   40 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            K  +K  HP E R  E  +IR+KYPDR+P+IVEKA K  VPD+ ++KYLVP+DL+ GQF  ++RKRI L  E A+F FV NT+PPT A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.911e-30
Identity = 64/122 (52.46%), Postives = 91/122 (74.59%), Query Frame = 1
Query:   31 AMAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLS---AEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            A+   SFK E+ LE+R   S++IR +Y DR+P+IVE+A  +DVPDI+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP+  L+S+IY+ +KDEDGFLY+ YSGENTFG
Sbjct:    2 ALLSKSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.802e-30
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   34 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDE-DGFLYMTYSGENTFG 384
            M    FK E  LE R  ESA +   YPDRIPVIVEK  ++++P++ K+KYLVP ++ VGQF++++R R+ LS   A+FVFV NTLP T  LM ++YE  KDE DGFLY+ YS E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
The following BLAST results are available for this feature:
BLAST of CX299906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_BOVIN2.544e-3457.39Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH3.323e-3461.95Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRAP_RAT9.667e-3456.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT9.667e-3456.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE9.667e-3456.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN9.667e-3456.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN9.667e-3456.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL3_HUMAN1.182e-3153.91Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI2.911e-3052.46Autophagy-related protein 8-like protein DDB_G0290... [more]
ATG8D_ORYSJ3.802e-3054.24Autophagy-related protein 8D OS=Oryza sativa subsp... [more]

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Properties
Property NameValue
Genbank descriptionC07003H02SK NTLeaf1 Citrus clementina cDNA clone C07003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299906 ID=CX299906; Name=CX299906; organism=Citrus clementina; type=EST; length=491bp
ACCCCGGGCTGCAGGCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTCACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
GAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATC
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