CX299906

Overview
NameCX299906
Unique NameCX299906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16
Identity = 44/116 (37.93%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   49 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 387
            FK       R  E  +IR+++P +IPVI+E  K EK  +P + K K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16
Identity = 44/116 (37.93%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   49 FKLEHPLERRLAESARIREKYPDRIPVIVE--KAEKTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 387
            FK       R  E  +IR+++P +IPVI+E  K EK  +P + K K+LVP  +++ + V ++R+R++L+  +A F+ V ++++      ++ IYE+ KDEDGFLYM Y+ + TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEK-QLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of CX299906 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14
Identity = 37/115 (32.17%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   46 SFKLEHPLERRLAESARIREKYPDRIPVIVEKAE-KTDVPDIHKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFV-KNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 384
            SFK   P   R  +   IR + P+++PVI+E+ + +  +P + + K+LVP  ++V + + +VR+R++L  ++A F+ V + ++      MS +Y + +D DGF+YM Y+ +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CX299906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_MOUSE1.074e-1637.93Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN1.074e-1637.93Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL2.239e-1432.17Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionC07003H02SK NTLeaf1 Citrus clementina cDNA clone C07003H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299906 ID=CX299906; Name=CX299906; organism=Citrus clementina; type=EST; length=491bp
ACCCCGGGCTGCAGGCGTAGCGTCAGTTTCGCCATGGCCAAAAGTTCATT
CAAGCTCGAGCATCCATTGGAGAGGAGGCTGGCAGAATCTGCTCGCATTA
GAGAGAAGTATCCTGACAGGATTCCGGTGATTGTGGAGAAGGCTGAGAAG
ACTGATGTTCCTGACATTCACAAGAAAAAATACCTTGTCCCAGCGGATTT
ATCTGTGGGACAATTTGTTTATGTTGTCCGTAAAAGGATTAAGCTCAGTG
CAGAAAAGGCCATATTTGTTTTTGTTAAGAATACTTTACCTCCAACCGGT
GCCTTGATGTCTGCTATATATGAGGAAAACAAGGATGAAGATGGTTTTCT
TTACATGACTTACAGTGGAGAGAATACCTTCGGTTGGTCATTTTAAGAGC
GAAGGCAACAAGCCATGTATCATAAAATTTGAAAGTTGTATATTCTCAGT
TGATCCCTTTTAAGCCATTCCCAGACATGTTCACTGATATC
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