CX299908 | Citrus Genome Database

Overview


Name	CX299908
Unique Name	CX299908
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	378

Libraries


Library Name	Type
NTLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_EDWI9 (ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella ictaluri (strain 93-146) GN=clpP PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  KE+ ++KA +  L AKH G+  E IE D  R ++ S  +AVEYG++D VL
Sbjct:  132 VMIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDAVEYGLVDAVL 202

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SODGM (ATP-dependent Clp protease proteolytic subunit OS=Sodalis glossinidius (strain morsitans) GN=clpP PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VKA + +L AKH G+  E IE D  R ++ S  EAV+YG++D VL
Sbjct:  120 VMIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEAVDYGLVDSVL 190

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALPK (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALPA (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

[Close]

BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQATD+EI  +E+  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203

The following BLAST results are available for this feature:

BLAST of CX299908 vs. ExPASy Swiss-Prot

BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169


Match Name	E-value	Identity	Description
CLPP_EDWI9	2.130e-13	49.30	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SODGM	2.782e-13	49.30	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALTY	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALTI	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALSV	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALPK	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALPA	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALNS	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALHS	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]
CLPP_SALEP	2.782e-13	47.89	ATP-dependent Clp protease proteolytic subunit OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG