CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQATD+ I  KE+  +K +L  L A+H G++ E++ AD  R  + S  EA  YGIID ++
Sbjct:  119 IMIHQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_EHRCR (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia chaffeensis (strain Arkansas) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G  +GQATD+EI  KE+ ++K  L  +Y KH G+   ++ A++ R  +    +A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMERDNFMRAEKAKDFGIIDKVI 190          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_EHRCJ (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia canis (strain Jake) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G  +GQATD+EI  KE+ ++K+ L  +Y KH G+   ++ A++ R  +    +A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILDIKSRLNDIYVKHTGRDLPEVVANMERDNFMRAEKAKDFGIIDKVI 190          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPS (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain SM101 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQATD++I  K +  +K +L ++ +++  +  E+I+ D+ R  +   SEAVEYG+IDKV+
Sbjct:  121 IMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQATD++I  K +  +K +L ++ +++  +  E+I+ D+ R  +   SEAVEYG+IDKV+
Sbjct:  121 IMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CLOP1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQATD++I  K +  +K +L ++ +++  +  E+I+ D+ R  +   SEAVEYG+IDKV+
Sbjct:  121 IMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA D+EI  +E+   K+ L  L A+H G+  E+IE D  R  + SP EA  YG+ID+VL
Sbjct:  154 IMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA D+EI  +E+   K+ L  L A+H G+  E+IE D  R  + SP EA  YG+ID+VL
Sbjct:  154 IMIHQPLGGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMM (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA D+EI  KE+  +K  L  L A+H G+   +I  D  R  + SP++AVEYG+ID+V+
Sbjct:  142 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLNKIAEDTDRDHFLSPAKAVEYGLIDRVV 212          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP_GEOBB9.893e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRCR9.893e-1142.25ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRCJ9.893e-1142.25ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPS9.893e-1142.25ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPE9.893e-1142.25ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOP19.893e-1142.25ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNP69.893e-1147.89ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNE79.893e-1147.89ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMM9.893e-1146.48ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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