CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERPP (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis (strain Pestoides F) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERPN (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERPE (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERPA (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERP3 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L A H GK+ E+IE D  R ++ S  ++VEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQSVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PORGI (ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas gingivalis GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.197e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G ++GQA+D+EIA +E+  VK EL  + + H GK  EQ+E D  R  + +  EA+EYG+IDK+L
Sbjct:  147 VMIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKIL 217          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.093e-13
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 258
            IMI QP+G  +GQA D+EI  KE+  +K  L  L A+H G+  ++I  D  R  + SP+EAVEYG+ID+V+    S  D G+V+D
Sbjct:  125 IMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV---DSSGDEGIVTD 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 237
            IMI QP+G  +GQATD+EI  KE+  ++ +L  + A H GKT ++IE+D  R  + S  EA +YG+ID+VL   +  E
Sbjct:  120 IMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEAQKYGLIDEVLVKREDVE 197          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_DESMR (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 237
            IMI QP G  +GQATD+EI  KE +  +  L ++ AKH G++ E+I+ D  R  + S  EAV YG+IDKVL + +  E
Sbjct:  120 IMIHQPSGGYQGQATDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDTERDNFMSAEEAVAYGLIDKVLTSRERLE 197          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMP (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.057e-12
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G  +GQA ++EI  KE+  +K  L  L AKH  ++ E+I  D  R  + SP EAVEYG+IDKV+  +K
Sbjct:  141 IMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKNDK 215          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP_YERPP6.197e-1347.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPN6.197e-1347.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPE6.197e-1347.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERPA6.197e-1347.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERP36.197e-1347.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PORGI6.197e-1347.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS98.093e-1345.88ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_DESPS1.057e-1244.87ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESMR1.057e-1246.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMP1.057e-1248.00ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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