CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA ++EI  KE+  +K  L  L A+H G+  E+I  D  R  + SPSEAVEYG+IDKV+
Sbjct:  147 IMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVI 217          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSB (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain BH72) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.803e-12
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  +E+  ++  L  + AKH G+T EQIE D  R  + S + AVEYG++DKVL
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDTDRDNFMSATAAVEYGLVDKVL 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.355e-12
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G  +GQATD+ I   E+  +K  +++L +KH G++ E I  D  R ++FS SEAV YG+IDKV+   K
Sbjct:  120 IMIHQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTERDRFFSGSEAVIYGLIDKVITCRK 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_ALCBS (ATP-dependent Clp protease proteolytic subunit OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=clpP PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.355e-12
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  KE+  +K +L  L A H G+  EQ+E D  R  + S  EA EYGIID VL
Sbjct:  130 VMIHQPLGGFQGQASDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDTDRDNFMSADEAKEYGIIDAVL 200          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_MAGSM (ATP-dependent Clp protease proteolytic subunit OS=Magnetococcus sp. (strain MC-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.075e-12
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 237
            +MI QP+G   GQA+D EI  +E+  ++  L ++ + H GK  EQ++ D  R  + S +EAVEYG++DKV+   + PE
Sbjct:  120 VMIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEAVEYGLVDKVISHRELPE 197          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.075e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            IMI QP+G + GQATD+EI  KE+  +KA+L +L  KH G++ E++E D  R  +   SEA  YGIID++
Sbjct:  122 IMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.075e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            IMI QP+G + GQATD+EI  KE+  +KA+L +L  KH G++ E++E D  R  +   SEA  YGIID++
Sbjct:  122 IMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEI 191          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPW (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain W619) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  +E+ N+KA L +L A H G+  E I+ D  R  + S S A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPK (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain KT2440) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  +E+ N+KA L +L A H G+  E I+ D  R  + S S A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEP1 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  +E+ N+KA L +L A H G+  E I+ D  R  + S S A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRAAEYGLIDSV 205          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP4_PROM91.380e-1250.70ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP_AZOSB1.803e-1247.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_WIGBR2.355e-1246.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALCBS2.355e-1249.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MAGSM3.075e-1241.03ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA3.075e-1248.57ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD3.075e-1248.57ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_PSEPW4.017e-1248.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPK4.017e-1248.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEP14.017e-1248.57ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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