CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEE4 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas entomophila (strain L48) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  +E+ N+KA L +L A H G++ E I+ D  R  + S + A EYG+ID V
Sbjct:  136 VMIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARAAEYGLIDSV 205          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_MOUSE (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Mus musculus GN=Clpp PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  171 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_HUMAN (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Homo sapiens GN=CLPP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  175 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_BOVIN (Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Bos taurus GN=CLPP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G   GQATD+ I  +E+  +K +L  +YAKH  ++ + IE+ + R +Y SP EA E+GI+DKVL
Sbjct:  171 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 241          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA ++EI  KE+  +K  L  L A+H G++ E+I  D  R  + SP EAVEYG+IDKV+
Sbjct:  142 IMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            I++ QP G   GQATD+ I  +E+   K  L +L + H GKT EQI+ D  R  Y SP EAV YG+IDKVL
Sbjct:  131 IILYQPYGGARGQATDINIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVL 201          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_FRASC (ATP-dependent Clp protease proteolytic subunit 2 OS=Frankia sp. (strain CcI3) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 231
            I+I QP  + EGQ++D+EI  +E+  +++ L ++ A H GK  E I  DI R K FS  EA EYG+ID+V+ T KS
Sbjct:  135 ILIHQPSAQGEGQSSDIEIQAREILRMRSLLERMLAVHTGKKEEDIRKDIERDKIFSADEAKEYGLIDEVIKTRKS 210          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 240
            IMI QP+G  +GQATD+EI  KE+  +KA L +  A H GK+ E+I AD  R  + S  E+ EYG+ID+V+    S  D
Sbjct:  118 IMIHQPLGGAQGQATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLIDQVINRRPSASD 196          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSD 258
            IMI QP+G  +GQA D+EI  KE+  +K  L  L A+H G+  ++I  D  R  + SP+EAVEYG+ID+V+    S  D G++++
Sbjct:  125 IMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV---DSSGDGGIITE 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_GLUOX (ATP-dependent Clp protease proteolytic subunit 1 OS=Gluconobacter oxydans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 240
            +M+ QP G  +GQA+D+EI  +E+  ++  L ++Y +H G+T EQIE  + R  Y S +EA E+G+IDKV+  E++P +
Sbjct:  133 VMVHQPSGGAQGQASDIEIQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLIDKVV--ERNPHE 209          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP_PSEE44.017e-1247.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOUSE4.017e-1247.89Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP_HUMAN4.017e-1247.89Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP_BOVIN4.017e-1247.89Putative ATP-dependent Clp protease proteolytic su... [more]
CLPP3_PROMA4.017e-1249.30ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_GLOVI4.017e-1250.70ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_FRASC4.017e-1246.05ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNY34.017e-1246.84ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNSC4.017e-1243.53ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_GLUOX4.017e-1241.77ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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