CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_SULNB (ATP-dependent Clp protease proteolytic subunit OS=Sulfurovum sp. (strain NBC37-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G  +GQ+TD++I  +E++ +K  L ++ A+  GKT ++IE D  R  + S  EAVEYG+IDKVL
Sbjct:  120 IMIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEAVEYGLIDKVL 190          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G ++GQATD++I  +E+  ++  L +L  KH G+  E+IE D  R  + S +EA EYGIID+V+   K
Sbjct:  121 IMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVITVRK 195          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP3_ANAVT (ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 234
            IMI QP+G  +GQA D+EI  +E+  +KA+L +L A H G+  E+IEAD  R  + S  EA  YG+ID+V+  +  P
Sbjct:  128 IMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNLP 204          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP2_ANASP (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSP 234
            IMI QP+G  +GQA D+EI  +E+  +KA+L +L A H G+  E+IEAD  R  + S  EA  YG+ID+V+  +  P
Sbjct:  146 IMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNLP 222          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPF (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf0-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.851e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  KE+  ++  L  L AKH G+T E+IE D  R  + S   A EYG+ID+V+
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVI 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            +MI QP+G  +GQAT++EIA   +   +A+L K+ A+  G++ EQIE D  R  + +  EA EYG+ID+V+  EK
Sbjct:  120 VMIHQPLGGAQGQATEIEIAATHILKTRAKLNKILAERTGQSIEQIEKDTDRDNFLTADEAKEYGLIDEVMQPEK 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PSEF5 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  KE+  ++  L  L AKH G+T E+IE D  R  + S   A EYG+ID+V+
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAREYGLIDEVI 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PHOPR (ATP-dependent Clp protease proteolytic subunit OS=Photobacterium profundum GN=clpP PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D++I  KE+  +K  L  L AKH G+  E +E D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDTDRDNFMSADQAVEYGLVDSVL 195          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+ I  KE+ +++  L ++ A+H G+  E+IE D  R  + S +EA EYG+IDKVL
Sbjct:  133 VMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAEYGLIDKVL 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_AZOBR (ATP-dependent Clp protease proteolytic subunit OS=Azospirillum brasilense GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHG 246
            IMI QP G  +GQA+D+EI  +E+  +++ L  +Y KH G++ + IEA + R K+ SP EA  +G+ID+V+  EK P   G
Sbjct:  128 IMIHQPSGGAQGQASDIEIQAQEILKLRSRLNDIYVKHTGQSLDTIEAXMERDKFMSPEEAKAFGLIDEVV--EKRPGSIG 206          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP_SULNB5.246e-1247.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ5.246e-1245.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANAVT5.246e-1245.45ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_ANASP5.246e-1245.45ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PSEPF6.851e-1246.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT8.948e-1244.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEF58.948e-1246.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHOPR8.948e-1245.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DECAR8.948e-1245.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOBR8.948e-1243.21ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
back to top