CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMT (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQA ++EI  KE+  +K  L  L A+H G+  ++I  D  R  + SP EAVEYG+IDKV+
Sbjct:  118 IMIHQPLGGAQGQAVEIEIQAKEILYLKETLNSLLAEHTGQNIQKISEDTDRDHFLSPQEAVEYGLIDKVV 188          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_VIBVY (ATP-dependent Clp protease proteolytic subunit OS=Vibrio vulnificus (strain YJ016) GN=clpP PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D++I  +E+  +K +L KL A+H G+  E IE D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 195          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_VIBVU (ATP-dependent Clp protease proteolytic subunit OS=Vibrio vulnificus GN=clpP PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D++I  +E+  +K +L KL A+H G+  E IE D  R  + S  +AVEYG++D VL
Sbjct:  125 VMIHQPLGGFQGQASDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVL 195          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_EHRRW (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia ruminantium (strain Welgevonden) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G  +GQATD+EI  KE+ N+K+ L  +Y KH G+   ++ A + R  + S   A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSAQDFGIIDKVI 190          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_EHRRG (ATP-dependent Clp protease proteolytic subunit OS=Ehrlichia ruminantium (strain Gardel) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP G  +GQATD+EI  KE+ N+K+ L  +Y KH G+   ++ A + R  + S   A ++GIIDKV+
Sbjct:  120 IMIHQPSGGFQGQATDIEIHAKEILNIKSRLNYIYVKHTGRELSEVVASMERDNFMSADSAQDFGIIDKVI 190          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_COXBN (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain Dugway 5J108-111) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            ++MI Q +G  +GQ TD++I  K+ + V  +L ++ AKH GK  E++E D  R  + +P EAVEYG+ID + +TE+
Sbjct:  120 SVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI-FTER 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_COXB2 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuG_Q212) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            ++MI Q +G  +GQ TD++I  K+ + V  +L ++ AKH GK  E++E D  R  + +P EAVEYG+ID + +TE+
Sbjct:  120 SVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI-FTER 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_COXB1 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuK_Q154) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            ++MI Q +G  +GQ TD++I  K+ + V  +L ++ AKH GK  E++E D  R  + +P EAVEYG+ID + +TE+
Sbjct:  120 SVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI-FTER 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CHRVO (ATP-dependent Clp protease proteolytic subunit OS=Chromobacterium violaceum GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 IMIKQPI---GRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            +MI QP+   G + GQ TD+EI  +E+  VKA++ +L AKH G+T E++++D  R  + S  EA  YG+IDKVL + +
Sbjct:  129 VMIHQPLLYGGGLSGQVTDIEIHARELVKVKAKMNELLAKHSGQTLERVQSDTERDNFMSAEEARAYGMIDKVLSSRR 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_VIBSL (ATP-dependent Clp protease proteolytic subunit OS=Vibrio splendidus (strain LGP32) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D++I  +E+  +K +L KL A+H G+  E +E D  R  + S  +AVEYG++D VL
Sbjct:  133 VMIHQPLGGFQGQASDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDTDRDNFMSADQAVEYGLVDSVL 203          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP3_PROMT8.948e-1247.89ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_VIBVY1.169e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBVU1.169e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRRW1.169e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EHRRG1.169e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXBN1.169e-1142.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB21.169e-1142.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB11.169e-1142.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHRVO1.169e-1143.59ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VIBSL1.526e-1143.66ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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