CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_THIDA (ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  KE+  +KA L  + AKH G++ E I+ D  R  + S  ++V+YG++DKVL
Sbjct:  134 VMIHQPLGGFQGQASDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDTDRDNFMSAEDSVKYGLVDKVL 204          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IM+ QP+G   GQA+D+EI  +E+  +K  L  +Y KH GKT EQI+ D  R  Y +  EA  YGIID V+  ++
Sbjct:  120 IMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSF (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain FRC-32) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            IMI QP+G  +GQATD+ I  +E+  +K +L +L A+H G+T E+IEAD  R  + S  +A  YGIID ++
Sbjct:  119 IMIHQPLGGFQGQATDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDYFMSGEDAKTYGIIDSII 189          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPE 237
            IMI QP G  +GQ TD+ I  +E++ ++  L +L AKH G+  E++  D  R ++ +P EA+EYG+ID +     +PE
Sbjct:  145 IMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKRPTPE 222          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IM+ QP+G   GQA+D+EI  +E+  +K  L  +Y KH GKT EQI+ D  R  Y +  EA  YGIID V+  ++
Sbjct:  120 IMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQIDR 194          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_THICR (ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira crunogena (strain XCL-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  KE+  +K +L K  A H G+  E IE D  R  + S  EA +YG++DKVL
Sbjct:  127 VMIHQPLGGFQGQASDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDTDRDNFMSADEACDYGLVDKVL 197          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G  EG A DVEI  +E+  +K  L ++ +KH G+  E+IE D  R  + S  EA EYGI+DKV+ T +
Sbjct:  129 IMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G  EG A DVEI  +E+  +K  L ++ +KH G+  E+IE D  R  + S  EA EYGI+DKV+ T +
Sbjct:  129 IMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEK 228
            IMI QP+G  EG A DVEI  +E+  +K  L ++ +KH G+  E+IE D  R  + S  EA EYGI+DKV+ T +
Sbjct:  129 IMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVVSTRE 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_RHOPT (ATP-dependent Clp protease proteolytic subunit OS=Rhodopseudomonas palustris (strain TIE-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPED 240
            IM+ QP G  +GQATD+ +  +E+ N+K  L ++Y  H G+T + IE  + R K+ +   A E+GI+DKV+  EK PED
Sbjct:  128 IMVHQPSGGFQGQATDIMLHAQEILNLKKRLNEIYVHHTGQTYKAIEDALERDKFLTAEMAREFGIVDKVI--EKRPED 204          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPP_THIDA1.526e-1145.07ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN1.526e-1145.33ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSF1.526e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH1.526e-1139.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEPIC1.526e-1145.33ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THICR1.993e-1146.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ1.993e-1146.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP11.993e-1146.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA1.993e-1146.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RHOPT1.993e-1143.04ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
back to top