CX299915

Overview
NameCX299915
Unique NameCX299915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1171 contig Ccv1_Contig1171:313..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG  P H HP A+E+ +V+ G +  G I +  + N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:  106 APGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG-ADGALGFVSFNSPNPGLQITDFALF 261
            A GG+ P HTHP A+E++ V+ G +  GFI++ AN ++ KT+KKG++ +FP+GL+H+Q N+  A  A    +FNS  PG Q     LF
Sbjct:  100 APGGLNPPHTHPRATEVIFVLEGELDVGFITT-ANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLF 186          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG  P H HP A+E+ +V+ G +  G I +    N  Y K ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:  108 APGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKSKFTG 227          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG  P H HP A+E+ +V+ G +  G I S  + N  Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N  + + ++ +   +D   V+ LK    G
Sbjct:  106 APGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKSKFTG 225          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    7 GGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 333
            G + P H HP A+E+  +V G + +GF+ S+ N VY K +++G++M++P+GL+HFQ+N G   A      NS NPG+Q     +F + ++ +L+ +   L    +  LK
Sbjct:  109 GSINPPHYHPRATEVAHLVKGRVYSGFVDSN-NKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGSGINEELLMKAFGLSLKQIGTLK 216          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 270
            A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F ++
Sbjct:  103 APKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSH 197          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 270
            A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N
Sbjct:  103 APGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSN 194          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            A GGV P+H+HP A+E++ VV G + AGF+S+ A   Y K L +G+  + P+G++HFQ N G   A    +FNS  PG+      LF ++  +   ++ ++  +D   +K LK
Sbjct:  111 APGGVNPLHSHPRATELIHVVAGRVLAGFVST-AGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLK 222          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL+++ G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +   ++  ++ Q   LD   VK L+
Sbjct:  106 GQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLE 217          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.761e-13
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K L KGD+ +FPQGL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+
Sbjct:  104 GQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQ 215          
The following BLAST results are available for this feature:
BLAST of CX299915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GL35_ORYSJ7.903e-1435.00Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH7.903e-1444.32Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL34_ORYSJ1.032e-1335.00Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL33_ORYSJ1.032e-1335.00Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL32_ARATH1.032e-1334.86Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL124_ORYSJ1.032e-1342.11Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
OXO2_HORVU1.348e-1341.30Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL38_ORYSJ1.348e-1336.28Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL113_ARATH1.348e-1336.61Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL85_ORYSJ1.761e-1336.61Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC07004A01SK SaltLeaf1 Citrus clementina cDNA clone C07004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299915 ID=CX299915; Name=CX299915; organism=Citrus clementina; type=EST; length=529bp
GCAAAGGGTGGCGTAATCCCAATGCACACTCATCCAGCTGCTTCCGAAAT
CCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAG
CTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTTT
CCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCT
CGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACTGATT
TCGCCTTATTTGCCAACAACTTGTCTTCCCAATTGGTGGAGCAGACCACT
TTCCTTGACGATGCTACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCAC
CGGCTAGGCTTATTAGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTT
AATTTCATTTAGTTGCTAATGTATTTGATTGTTGGAATTCACGAGTTAGT
ATTTTCTCTGTTCTCACTTCCCCTATCTTTTCTTCTGAATAAATAAAATT
TCTCTCAAAAAAAAAAAAAAAAAAAAAAA
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