CX299915

Overview
NameCX299915
Unique NameCX299915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1171 contig Ccv1_Contig1171:313..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.761e-13
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 270
            A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N
Sbjct:  103 APGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSN 194          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 261
            A GG+ P HTHP A+E++ V+ G +  GFI+++ N +  KT+ KG+  +FP+GL+HFQ N+G + A     FNS  PG       LF
Sbjct:   99 APGGLNPPHTHPRATEMVFVLEGQLDVGFITTT-NQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLF 184          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF ++  + + ++ +   ++   V+ LK    G
Sbjct:   80 APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAG 199          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSAN--TVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGI 339
            A GG+ P HTHP  SEI LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+ F  N G   A+   +  S NPG  I   A+F +   +  +++ +   LD   VK  + +
Sbjct:  104 APGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAV 220          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K LKKGD+ +FP GL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+
Sbjct:  105 GQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQ 216          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.003e-13
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSAN--TVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGI 339
            A GG+ P HTHP  S+I LV+ G +  GF+SS+    T++ K L  GD+ +FP+GL+HF  N G   A+   +  S +PG  I   A+F +   +  +++ +   LD   VK L+ +
Sbjct:  104 APGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAV 220          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S +++ +   ++  T+  L+
Sbjct:  104 GENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQ 215          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+
Sbjct:  105 GENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQ 216          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFAN 267
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K L KGD+ +FP+GL+HFQ N      A+   + +S NPG      A+F +
Sbjct:  104 GENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFAN 267
            G  P HTHP A+EIL V+ G +  GF++S+ N T++ K L KGD+ +FP GL+HFQ N      A+   + +S NPG+     A+F +
Sbjct:  104 GQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGS 191          
The following BLAST results are available for this feature:
BLAST of CX299915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GER2_WHEAT1.761e-1341.30Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
RHRE_PEA2.300e-1342.53Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
OXO1_HORVU2.300e-1334.17Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GL15_ARATH2.300e-1335.90Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL86_ORYSJ3.003e-1336.61Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL14_ARATH3.003e-1335.90Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL88_ORYSJ5.123e-1335.71Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL87_ORYSJ5.123e-1335.71Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ8.738e-1342.05Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL89_ORYSJ1.491e-1242.05Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC07004A01SK SaltLeaf1 Citrus clementina cDNA clone C07004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299915 ID=CX299915; Name=CX299915; organism=Citrus clementina; type=EST; length=529bp
GCAAAGGGTGGCGTAATCCCAATGCACACTCATCCAGCTGCTTCCGAAAT
CCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAG
CTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTTT
CCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCT
CGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACTGATT
TCGCCTTATTTGCCAACAACTTGTCTTCCCAATTGGTGGAGCAGACCACT
TTCCTTGACGATGCTACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCAC
CGGCTAGGCTTATTAGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTT
AATTTCATTTAGTTGCTAATGTATTTGATTGTTGGAATTCACGAGTTAGT
ATTTTCTCTGTTCTCACTTCCCCTATCTTTTCTTCTGAATAAATAAAATT
TCTCTCAAAAAAAAAAAAAAAAAAAAAAA
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