CX299915

Overview
NameCX299915
Unique NameCX299915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1171 contig Ccv1_Contig1171:313..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFAN 267
            GV P H HP A+E+L V+ G +  GF++S+ N ++ K + KGD+ +FP+ ++HFQ+N   +  A+   + +S NPG+     A+F +
Sbjct:  106 GVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGS 192          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 39/120 (32.50%), Postives = 62/120 (51.67%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   V FNS +P +      LF +N  +   ++ +   ++   V+ LK    G
Sbjct:  103 APGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAG 222          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   10 GVIPMHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLK 333
            G  P HTHP A+EIL V+ G +  GF++S+  N  + K L KGD+ +FP GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+
Sbjct:  104 GQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQ 215          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 AKGGVIPMHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATVKRLKGILGG 348
            A GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q+  F+ F     L  +++++   +    V+R++  LGG
Sbjct:  107 APGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHLGG 224          
BLAST of CX299915 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 36/116 (31.03%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    7 GGVIPMHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN---LSSQLVEQTTFLDDATVKRLK 333
            GG  P H+HP A+EIL V  G +  GF+ ++A    + +  + + KG + +FP+GLLH++ + G   A+   +F+S  PG Q    ALF ++   + + ++ +   +D   V+ +K
Sbjct:  114 GGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAFQVDGGVVENIK 229          
The following BLAST results are available for this feature:
BLAST of CX299915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GL83_ORYSJ9.661e-1236.78Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GER3_WHEAT1.648e-1132.50Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL811_ORYSJ2.152e-1134.82Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ2.152e-1132.77Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL14_ORYSJ2.811e-1131.03Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC07004A01SK SaltLeaf1 Citrus clementina cDNA clone C07004A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299915 ID=CX299915; Name=CX299915; organism=Citrus clementina; type=EST; length=529bp
GCAAAGGGTGGCGTAATCCCAATGCACACTCATCCAGCTGCTTCCGAAAT
CCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAG
CTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTTT
CCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGCGCGGACGGAGCCCT
CGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACTGATT
TCGCCTTATTTGCCAACAACTTGTCTTCCCAATTGGTGGAGCAGACCACT
TTCCTTGACGATGCTACGGTGAAGAGGCTCAAGGGTATCCTTGGTGGCAC
CGGCTAGGCTTATTAGTTACCACATTCTTCATTTGTAGTTTTGAGTTCTT
AATTTCATTTAGTTGCTAATGTATTTGATTGTTGGAATTCACGAGTTAGT
ATTTTCTCTGTTCTCACTTCCCCTATCTTTTCTTCTGAATAAATAAAATT
TCTCTCAAAAAAAAAAAAAAAAAAAAAAA
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